CYTIP report

Query

Invalid input gene. Please select from the suggestions.

I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
natural killer cell	43 studies	46% ± 15%	Explore
CD8-positive, alpha-beta T cell	41 studies	47% ± 15%	Explore
B cell	39 studies	39% ± 12%	Explore
CD4-positive, alpha-beta T cell	37 studies	52% ± 15%	Explore
T cell	35 studies	43% ± 14%	Explore
regulatory T cell	28 studies	56% ± 16%	Explore
conventional dendritic cell	26 studies	36% ± 14%	Explore
non-classical monocyte	24 studies	53% ± 17%	Explore
dendritic cell	23 studies	42% ± 20%	Explore
macrophage	23 studies	25% ± 10%	Explore
plasma cell	23 studies	42% ± 16%	Explore
mature NK T cell	23 studies	47% ± 16%	Explore
classical monocyte	21 studies	31% ± 8%	Explore
memory B cell	20 studies	39% ± 15%	Explore
monocyte	19 studies	28% ± 11%	Explore
naive B cell	19 studies	42% ± 13%	Explore
mucosal invariant T cell	17 studies	42% ± 14%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	17 studies	49% ± 15%	Explore
gamma-delta T cell	17 studies	49% ± 16%	Explore
CD16-negative, CD56-bright natural killer cell, human	16 studies	41% ± 11%	Explore
CD16-positive, CD56-dim natural killer cell, human	15 studies	46% ± 14%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	14 studies	48% ± 13%	Explore
effector memory CD8-positive, alpha-beta T cell	12 studies	45% ± 16%	Explore
CD8-positive, alpha-beta memory T cell	12 studies	52% ± 14%	Explore
plasmablast	11 studies	45% ± 22%	Explore
CD4-positive, alpha-beta memory T cell	11 studies	48% ± 16%	Explore
plasmacytoid dendritic cell	11 studies	28% ± 11%	Explore
leukocyte	9 studies	44% ± 15%	Explore
innate lymphoid cell	8 studies	46% ± 15%	Explore
T follicular helper cell	8 studies	50% ± 21%	Explore
neutrophil	7 studies	32% ± 10%	Explore
effector CD8-positive, alpha-beta T cell	7 studies	43% ± 9%	Explore
IgA plasma cell	7 studies	32% ± 11%	Explore
CD4-positive helper T cell	6 studies	46% ± 19%	Explore
effector CD4-positive, alpha-beta T cell	6 studies	53% ± 10%	Explore
IgG plasma cell	6 studies	30% ± 6%	Explore
myeloid cell	6 studies	28% ± 6%	Explore
effector memory CD4-positive, alpha-beta T cell	6 studies	56% ± 12%	Explore
exhausted T cell	5 studies	45% ± 7%	Explore
mononuclear phagocyte	5 studies	36% ± 15%	Explore
lymphocyte	5 studies	41% ± 21%	Explore
precursor B cell	5 studies	32% ± 5%	Explore
T-helper 17 cell	5 studies	58% ± 12%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	5 studies	41% ± 13%	Explore
CD4-positive, alpha-beta cytotoxic T cell	4 studies	32% ± 18%	Explore
central memory CD8-positive, alpha-beta T cell	4 studies	36% ± 15%	Explore
immature B cell	4 studies	46% ± 9%	Explore
double negative thymocyte	4 studies	42% ± 18%	Explore
platelet	3 studies	20% ± 2%	Explore
intraepithelial lymphocyte	3 studies	47% ± 11%	Explore
germinal center B cell	3 studies	41% ± 13%	Explore
intermediate monocyte	3 studies	56% ± 20%	Explore
monocyte-derived dendritic cell	3 studies	54% ± 26%	Explore
alveolar macrophage	3 studies	24% ± 5%	Explore
group 3 innate lymphoid cell	3 studies	53% ± 10%	Explore
T-helper 1 cell	3 studies	64% ± 10%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	50% ± 12%	Explore
double-positive, alpha-beta thymocyte	3 studies	50% ± 24%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
peripheral blood	19 studies	39% ± 10%	Explore
lung	8 studies	28% ± 9%	Explore
lymph node	5 studies	41% ± 19%	Explore
bone marrow	4 studies	23% ± 9%	Explore
intestine	3 studies	37% ± 15%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
lung	100%	2740.64	578 / 578	95%	18.52	1095 / 1155
stomach	82%	820.19	296 / 359	81%	12.68	233 / 286
kidney	72%	444.26	64 / 89	87%	13.71	787 / 901
breast	65%	360.52	300 / 459	86%	13.69	966 / 1118
intestine	64%	831.23	614 / 966	83%	10.46	440 / 527
thymus	67%	426.64	440 / 653	69%	12.95	420 / 605
bladder	62%	488.48	13 / 21	66%	8.24	335 / 504
prostate	58%	279.87	142 / 245	60%	4.75	301 / 502
pancreas	21%	64.06	68 / 328	90%	16.81	160 / 178
uterus	35%	137.82	60 / 170	75%	8.71	344 / 459
esophagus	26%	98.11	369 / 1445	77%	8.09	140 / 183
lymph node	0%	0	0 / 0	100%	84.16	29 / 29
peripheral blood	100%	18050.52	929 / 929	0%	0	0 / 0
spleen	100%	4420.23	241 / 241	0%	0	0 / 0
liver	53%	237.15	120 / 226	40%	3.79	161 / 406
adipose	89%	703.08	1076 / 1204	0%	0	0 / 0
skin	29%	94.95	517 / 1809	61%	10.64	286 / 472
tonsil	0%	0	0 / 0	89%	18.89	40 / 45
blood vessel	76%	536.13	1009 / 1335	0%	0	0 / 0
ovary	14%	59.42	26 / 180	53%	3.59	229 / 430
brain	9%	35.58	225 / 2642	45%	3.33	317 / 705
heart	32%	150.53	277 / 861	0%	0	0 / 0
adrenal gland	11%	32.33	28 / 258	19%	1.17	44 / 230
eye	0%	0	0 / 0	6%	0.54	5 / 80
muscle	3%	13.39	28 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1