CMTM3 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
natural killer cell	23 studies	22% ± 6%	Explore
macrophage	16 studies	24% ± 7%	Explore
CD8-positive, alpha-beta T cell	15 studies	21% ± 6%	Explore
regulatory T cell	15 studies	23% ± 6%	Explore
fibroblast	13 studies	25% ± 8%	Explore
CD4-positive, alpha-beta T cell	12 studies	20% ± 4%	Explore
endothelial cell of lymphatic vessel	10 studies	30% ± 14%	Explore
gamma-delta T cell	10 studies	26% ± 7%	Explore
classical monocyte	9 studies	28% ± 9%	Explore
CD16-negative, CD56-bright natural killer cell, human	9 studies	25% ± 7%	Explore
CD16-positive, CD56-dim natural killer cell, human	9 studies	23% ± 6%	Explore
T cell	9 studies	19% ± 6%	Explore
plasmacytoid dendritic cell	9 studies	30% ± 8%	Explore
CD8-positive, alpha-beta memory T cell	8 studies	24% ± 7%	Explore
endothelial cell	8 studies	35% ± 16%	Explore
connective tissue cell	8 studies	26% ± 8%	Explore
mast cell	7 studies	23% ± 11%	Explore
conventional dendritic cell	7 studies	37% ± 21%	Explore
mucosal invariant T cell	7 studies	22% ± 3%	Explore
capillary endothelial cell	7 studies	30% ± 19%	Explore
dendritic cell	7 studies	34% ± 15%	Explore
mature NK T cell	6 studies	26% ± 10%	Explore
pericyte	6 studies	29% ± 8%	Explore
monocyte	6 studies	24% ± 12%	Explore
CD4-positive, alpha-beta memory T cell	6 studies	21% ± 5%	Explore
non-classical monocyte	5 studies	30% ± 8%	Explore
effector memory CD8-positive, alpha-beta T cell	5 studies	24% ± 4%	Explore
myofibroblast cell	5 studies	22% ± 4%	Explore
innate lymphoid cell	5 studies	20% ± 4%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	4 studies	22% ± 4%	Explore
myeloid cell	4 studies	28% ± 9%	Explore
effector memory CD4-positive, alpha-beta T cell	4 studies	23% ± 5%	Explore
T-helper 17 cell	4 studies	19% ± 3%	Explore
exhausted T cell	3 studies	25% ± 5%	Explore
hematopoietic precursor cell	3 studies	26% ± 7%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	3 studies	16% ± 1%	Explore
leukocyte	3 studies	22% ± 5%	Explore
vein endothelial cell	3 studies	31% ± 11%	Explore
smooth muscle cell	3 studies	16% ± 0%	Explore
microglial cell	3 studies	24% ± 10%	Explore
intraepithelial lymphocyte	3 studies	21% ± 3%	Explore
effector CD8-positive, alpha-beta T cell	3 studies	23% ± 2%	Explore
T follicular helper cell	3 studies	20% ± 2%	Explore
group 3 innate lymphoid cell	3 studies	27% ± 5%	Explore
mononuclear phagocyte	3 studies	28% ± 15%	Explore
T-helper 1 cell	3 studies	20% ± 4%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
peripheral blood	9 studies	22% ± 7%	Explore
lung	5 studies	23% ± 6%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
skin	99%	2357.59	1790 / 1809	100%	88.53	472 / 472
ovary	100%	3588.37	180 / 180	99%	45.91	424 / 430
breast	100%	3208.84	459 / 459	99%	73.48	1102 / 1118
thymus	99%	1668.91	647 / 653	97%	54.98	585 / 605
lung	100%	3490.81	577 / 578	95%	49.26	1101 / 1155
prostate	100%	2382.93	244 / 245	92%	23.12	461 / 502
bladder	100%	2248.43	21 / 21	91%	48.07	459 / 504
uterus	100%	3072.59	170 / 170	90%	45.35	411 / 459
kidney	93%	1360.37	83 / 89	90%	47.54	813 / 901
adrenal gland	100%	1471.91	257 / 258	77%	24.58	176 / 230
intestine	99%	1586.91	956 / 966	72%	23.29	381 / 527
esophagus	93%	1415.90	1344 / 1445	73%	24.13	133 / 183
stomach	75%	830.65	271 / 359	78%	24.82	223 / 286
brain	49%	399.35	1286 / 2642	99%	69.71	695 / 705
pancreas	21%	166.65	69 / 328	96%	87.20	171 / 178
adipose	100%	4265.55	1204 / 1204	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	73.86	29 / 29
spleen	100%	3334.08	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	29.33	1 / 1
eye	0%	0	0 / 0	99%	44.45	79 / 80
peripheral blood	96%	3108.07	895 / 929	0%	0	0 / 0
blood vessel	96%	1812.74	1283 / 1335	0%	0	0 / 0
heart	96%	1433.54	823 / 861	0%	0	0 / 0
tonsil	0%	0	0 / 0	89%	27.26	40 / 45
liver	26%	190.55	59 / 226	47%	16.79	192 / 406
muscle	23%	161.74	185 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0