CDC42SE1 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
natural killer cell	39 studies	40% ± 12%	Explore
CD8-positive, alpha-beta T cell	32 studies	28% ± 10%	Explore
B cell	31 studies	26% ± 8%	Explore
CD4-positive, alpha-beta T cell	31 studies	27% ± 10%	Explore
T cell	27 studies	27% ± 7%	Explore
macrophage	23 studies	23% ± 6%	Explore
conventional dendritic cell	22 studies	25% ± 12%	Explore
regulatory T cell	22 studies	30% ± 8%	Explore
mature NK T cell	21 studies	33% ± 10%	Explore
classical monocyte	21 studies	29% ± 11%	Explore
non-classical monocyte	19 studies	30% ± 12%	Explore
monocyte	18 studies	26% ± 7%	Explore
naive B cell	18 studies	29% ± 7%	Explore
memory B cell	18 studies	28% ± 9%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	17 studies	31% ± 11%	Explore
gamma-delta T cell	17 studies	33% ± 9%	Explore
CD16-negative, CD56-bright natural killer cell, human	16 studies	41% ± 14%	Explore
CD16-positive, CD56-dim natural killer cell, human	16 studies	47% ± 12%	Explore
dendritic cell	14 studies	27% ± 15%	Explore
endothelial cell	13 studies	23% ± 7%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	13 studies	32% ± 10%	Explore
mucosal invariant T cell	13 studies	29% ± 7%	Explore
CD8-positive, alpha-beta memory T cell	12 studies	32% ± 11%	Explore
effector memory CD8-positive, alpha-beta T cell	12 studies	33% ± 13%	Explore
CD4-positive, alpha-beta memory T cell	10 studies	31% ± 12%	Explore
leukocyte	8 studies	25% ± 6%	Explore
microglial cell	8 studies	26% ± 9%	Explore
mast cell	7 studies	21% ± 3%	Explore
effector CD8-positive, alpha-beta T cell	7 studies	29% ± 8%	Explore
endothelial cell of artery	7 studies	17% ± 1%	Explore
innate lymphoid cell	7 studies	37% ± 12%	Explore
myeloid cell	7 studies	27% ± 12%	Explore
basal cell	7 studies	33% ± 16%	Explore
T follicular helper cell	7 studies	24% ± 7%	Explore
pericyte	7 studies	21% ± 6%	Explore
neutrophil	6 studies	28% ± 4%	Explore
effector memory CD4-positive, alpha-beta T cell	6 studies	35% ± 10%	Explore
fibroblast	6 studies	19% ± 3%	Explore
mononuclear phagocyte	5 studies	29% ± 6%	Explore
epithelial cell	5 studies	36% ± 11%	Explore
effector CD4-positive, alpha-beta T cell	5 studies	32% ± 10%	Explore
oligodendrocyte	5 studies	26% ± 6%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	5 studies	30% ± 8%	Explore
squamous epithelial cell	4 studies	32% ± 14%	Explore
plasmablast	4 studies	30% ± 10%	Explore
plasmacytoid dendritic cell	4 studies	19% ± 4%	Explore
exhausted T cell	4 studies	39% ± 14%	Explore
lymphocyte	4 studies	31% ± 11%	Explore
immature B cell	4 studies	29% ± 7%	Explore
abnormal cell	4 studies	23% ± 7%	Explore
GABAergic neuron	4 studies	39% ± 13%	Explore
astrocyte	4 studies	24% ± 5%	Explore
glutamatergic neuron	4 studies	49% ± 13%	Explore
endothelial cell of vascular tree	4 studies	20% ± 3%	Explore
double negative thymocyte	4 studies	34% ± 5%	Explore
platelet	3 studies	18% ± 3%	Explore
megakaryocyte	3 studies	22% ± 4%	Explore
club cell	3 studies	18% ± 4%	Explore
ciliated cell	3 studies	36% ± 14%	Explore
intermediate monocyte	3 studies	45% ± 27%	Explore
myofibroblast cell	3 studies	17% ± 3%	Explore
CD4-positive helper T cell	3 studies	29% ± 10%	Explore
oligodendrocyte precursor cell	3 studies	33% ± 6%	Explore
granulocyte	3 studies	23% ± 5%	Explore
endothelial cell of lymphatic vessel	3 studies	16% ± 2%	Explore
group 3 innate lymphoid cell	3 studies	45% ± 12%	Explore
T-helper 17 cell	3 studies	31% ± 8%	Explore
interneuron	3 studies	42% ± 18%	Explore
neuron	3 studies	32% ± 4%	Explore
T-helper 1 cell	3 studies	33% ± 8%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	33% ± 5%	Explore
central memory CD8-positive, alpha-beta T cell	3 studies	27% ± 7%	Explore
erythrocyte	3 studies	21% ± 3%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
peripheral blood	17 studies	32% ± 8%	Explore
lung	9 studies	26% ± 10%	Explore
brain	7 studies	34% ± 14%	Explore
uterus	3 studies	23% ± 4%	Explore
kidney	3 studies	23% ± 6%	Explore
liver	3 studies	21% ± 4%	Explore
lymph node	3 studies	25% ± 6%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
bladder	100%	7277.71	21 / 21	100%	102.66	504 / 504
esophagus	100%	8164.44	1445 / 1445	100%	81.49	183 / 183
ovary	100%	6348.38	180 / 180	100%	68.67	430 / 430
breast	100%	6631.49	459 / 459	100%	132.41	1117 / 1118
lung	100%	10440.29	578 / 578	100%	115.89	1153 / 1155
stomach	100%	5288.04	359 / 359	100%	55.69	285 / 286
intestine	100%	6585.10	966 / 966	99%	58.09	524 / 527
prostate	100%	8510.53	245 / 245	99%	89.01	499 / 502
skin	100%	6876.12	1809 / 1809	99%	100.68	469 / 472
uterus	100%	6058.02	170 / 170	99%	102.78	454 / 459
thymus	100%	7610.07	653 / 653	99%	76.02	597 / 605
brain	96%	3175.20	2540 / 2642	100%	84.78	704 / 705
pancreas	97%	3156.61	318 / 328	98%	84.02	175 / 178
kidney	100%	5524.55	89 / 89	93%	46.86	839 / 901
adrenal gland	100%	6519.62	258 / 258	89%	40.09	204 / 230
liver	87%	2117.77	196 / 226	78%	32.82	315 / 406
lymph node	0%	0	0 / 0	100%	86.01	29 / 29
peripheral blood	100%	26021.74	929 / 929	0%	0	0 / 0
spleen	100%	16444.01	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	112.15	45 / 45
ureter	0%	0	0 / 0	100%	28.35	1 / 1
adipose	100%	6298.60	1203 / 1204	0%	0	0 / 0
blood vessel	100%	7202.63	1333 / 1335	0%	0	0 / 0
heart	99%	4057.09	849 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	95%	41.00	76 / 80
muscle	86%	2211.45	688 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0