CCDC59 | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
B cell	24 studies	24% ± 10%	Explore
natural killer cell	22 studies	23% ± 7%	Explore
CD8-positive, alpha-beta T cell	20 studies	23% ± 8%	Explore
CD4-positive, alpha-beta T cell	19 studies	26% ± 11%	Explore
regulatory T cell	18 studies	23% ± 6%	Explore
endothelial cell	15 studies	24% ± 8%	Explore
T cell	14 studies	21% ± 4%	Explore
naive B cell	14 studies	23% ± 5%	Explore
memory B cell	14 studies	24% ± 6%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	13 studies	24% ± 9%	Explore
gamma-delta T cell	12 studies	26% ± 13%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	11 studies	27% ± 10%	Explore
mature NK T cell	11 studies	22% ± 5%	Explore
plasmacytoid dendritic cell	11 studies	25% ± 8%	Explore
fibroblast	11 studies	24% ± 7%	Explore
mast cell	10 studies	24% ± 5%	Explore
CD16-negative, CD56-bright natural killer cell, human	10 studies	23% ± 6%	Explore
CD16-positive, CD56-dim natural killer cell, human	10 studies	25% ± 8%	Explore
classical monocyte	9 studies	28% ± 11%	Explore
non-classical monocyte	9 studies	31% ± 16%	Explore
mucosal invariant T cell	9 studies	24% ± 6%	Explore
smooth muscle cell	8 studies	20% ± 3%	Explore
CD4-positive, alpha-beta memory T cell	7 studies	32% ± 13%	Explore
conventional dendritic cell	7 studies	30% ± 16%	Explore
pericyte	7 studies	20% ± 2%	Explore
endothelial cell of vascular tree	7 studies	22% ± 5%	Explore
epithelial cell	7 studies	36% ± 22%	Explore
CD8-positive, alpha-beta memory T cell	7 studies	32% ± 5%	Explore
effector memory CD8-positive, alpha-beta T cell	6 studies	30% ± 12%	Explore
abnormal cell	6 studies	23% ± 5%	Explore
T follicular helper cell	6 studies	25% ± 7%	Explore
endothelial cell of lymphatic vessel	5 studies	25% ± 5%	Explore
hematopoietic precursor cell	5 studies	28% ± 18%	Explore
connective tissue cell	5 studies	20% ± 3%	Explore
precursor B cell	5 studies	26% ± 7%	Explore
monocyte	5 studies	19% ± 4%	Explore
ciliated cell	5 studies	31% ± 11%	Explore
basal cell	5 studies	30% ± 8%	Explore
innate lymphoid cell	5 studies	23% ± 5%	Explore
oligodendrocyte	5 studies	24% ± 6%	Explore
effector CD8-positive, alpha-beta T cell	4 studies	20% ± 5%	Explore
leukocyte	4 studies	26% ± 3%	Explore
capillary endothelial cell	4 studies	18% ± 4%	Explore
plasma cell	4 studies	29% ± 11%	Explore
immature B cell	4 studies	26% ± 5%	Explore
pro-B cell	4 studies	24% ± 3%	Explore
effector memory CD4-positive, alpha-beta T cell	4 studies	32% ± 15%	Explore
macrophage	4 studies	22% ± 7%	Explore
effector CD4-positive, alpha-beta T cell	3 studies	25% ± 11%	Explore
mononuclear phagocyte	3 studies	22% ± 7%	Explore
plasmablast	3 studies	45% ± 19%	Explore
myeloid cell	3 studies	35% ± 7%	Explore
type I pneumocyte	3 studies	23% ± 5%	Explore
GABAergic neuron	3 studies	31% ± 10%	Explore
glutamatergic neuron	3 studies	38% ± 8%	Explore
granulocyte	3 studies	21% ± 2%	Explore
goblet cell	3 studies	20% ± 4%	Explore
myofibroblast cell	3 studies	21% ± 3%	Explore
hematopoietic stem cell	3 studies	19% ± 4%	Explore
erythroblast	3 studies	32% ± 12%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	21% ± 5%	Explore
central memory CD8-positive, alpha-beta T cell	3 studies	18% ± 3%	Explore
double negative thymocyte	3 studies	34% ± 14%	Explore
astrocyte	3 studies	31% ± 13%	Explore
interneuron	3 studies	34% ± 15%	Explore
oligodendrocyte precursor cell	3 studies	21% ± 5%	Explore
secretory cell	3 studies	22% ± 9%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
peripheral blood	13 studies	27% ± 11%	Explore
lung	6 studies	24% ± 6%	Explore
intestine	6 studies	19% ± 7%	Explore
brain	6 studies	26% ± 9%	Explore
liver	4 studies	24% ± 11%	Explore
bone marrow	3 studies	22% ± 6%	Explore
eye	3 studies	20% ± 3%	Explore
uterus	3 studies	28% ± 9%	Explore
breast	3 studies	19% ± 4%	Explore
lymph node	3 studies	23% ± 3%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
bladder	100%	1029.90	21 / 21	100%	24.19	504 / 504
breast	100%	1345.54	459 / 459	100%	22.71	1118 / 1118
esophagus	100%	922.03	1445 / 1445	100%	19.83	183 / 183
intestine	100%	1013.66	966 / 966	100%	24.60	527 / 527
liver	100%	520.68	226 / 226	100%	12.73	406 / 406
ovary	100%	1426.71	180 / 180	100%	24.67	430 / 430
stomach	100%	784.28	359 / 359	100%	24.16	286 / 286
uterus	100%	1159.45	170 / 170	100%	28.78	459 / 459
lung	100%	976.87	577 / 578	100%	24.23	1155 / 1155
prostate	100%	940.71	245 / 245	100%	16.61	501 / 502
brain	100%	673.97	2634 / 2642	100%	17.58	705 / 705
thymus	100%	1084.14	653 / 653	100%	22.41	603 / 605
pancreas	100%	571.80	328 / 328	99%	17.01	177 / 178
adrenal gland	100%	785.59	258 / 258	99%	17.70	228 / 230
kidney	100%	816.71	89 / 89	99%	17.36	888 / 901
skin	100%	1181.13	1808 / 1809	93%	17.14	440 / 472
adipose	100%	1311.34	1204 / 1204	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	23.06	29 / 29
spleen	100%	1011.78	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	24.10	45 / 45
ureter	0%	0	0 / 0	100%	13.95	1 / 1
blood vessel	100%	1019.47	1334 / 1335	0%	0	0 / 0
muscle	100%	892.49	802 / 803	0%	0	0 / 0
heart	99%	671.62	855 / 861	0%	0	0 / 0
peripheral blood	88%	743.35	814 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	76%	9.50	61 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0005654	Cellular component	nucleoplasm
GO_0005515	Molecular function	protein binding
GO_0003723	Molecular function	RNA binding

IV. Literature review

[source]

Gene name	CCDC59
Protein name	Coiled-coil domain containing 59 Thyroid transcription factor 1-associated protein 26 (TTF-1-associated protein 26) (Coiled-coil domain-containing protein 59) (TTF-1-associated protein BR2)
Synonyms	BR22 HSPC128 TAP26
Description	FUNCTION: Component of the transcription complexes of the pulmonary surfactant-associated protein-B (SFTPB) and -C (SFTPC). Enhances homeobox protein Nkx-2.1-activated SFTPB and SFTPC promoter activities. .
Accessions	F8VNY5 ENST00000256151.8 Q9P031 ENST00000552377.5

CCDC59 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review