Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 788.09 | 1445 / 1445 | 100% | 20.60 | 183 / 183 |
ovary | 100% | 867.67 | 180 / 180 | 100% | 27.09 | 430 / 430 |
breast | 100% | 998.49 | 459 / 459 | 100% | 14.01 | 1114 / 1118 |
prostate | 100% | 974.78 | 245 / 245 | 100% | 14.33 | 500 / 502 |
lung | 100% | 922.79 | 576 / 578 | 100% | 17.52 | 1154 / 1155 |
uterus | 100% | 944.45 | 170 / 170 | 100% | 16.33 | 457 / 459 |
brain | 100% | 783.90 | 2630 / 2642 | 100% | 14.08 | 704 / 705 |
thymus | 100% | 992.21 | 653 / 653 | 99% | 15.87 | 600 / 605 |
liver | 100% | 774.81 | 226 / 226 | 99% | 10.55 | 400 / 406 |
bladder | 100% | 792.10 | 21 / 21 | 98% | 13.17 | 494 / 504 |
kidney | 100% | 1119.21 | 89 / 89 | 98% | 12.78 | 880 / 901 |
pancreas | 98% | 407.78 | 322 / 328 | 99% | 12.90 | 177 / 178 |
stomach | 100% | 780.63 | 359 / 359 | 98% | 14.91 | 279 / 286 |
intestine | 100% | 861.15 | 966 / 966 | 97% | 12.81 | 509 / 527 |
skin | 100% | 865.64 | 1807 / 1809 | 94% | 10.90 | 446 / 472 |
adrenal gland | 100% | 1088.95 | 258 / 258 | 93% | 12.69 | 215 / 230 |
blood vessel | 100% | 1053.24 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 15.41 | 29 / 29 |
spleen | 100% | 1017.71 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 11.73 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 4.83 | 1 / 1 |
adipose | 100% | 967.62 | 1203 / 1204 | 0% | 0 | 0 / 0 |
muscle | 100% | 1006.63 | 802 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 640.80 | 848 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 87% | 734.63 | 809 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 75% | 5.47 | 60 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006915 | Biological process | apoptotic process |
GO_0010468 | Biological process | regulation of gene expression |
GO_0000460 | Biological process | maturation of 5.8S rRNA |
GO_0045892 | Biological process | negative regulation of DNA-templated transcription |
GO_0005730 | Cellular component | nucleolus |
GO_0000176 | Cellular component | nuclear exosome (RNase complex) |
GO_0005654 | Cellular component | nucleoplasm |
GO_0000178 | Cellular component | exosome (RNase complex) |
GO_0017053 | Cellular component | transcription repressor complex |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0016922 | Molecular function | nuclear receptor binding |
GO_0003714 | Molecular function | transcription corepressor activity |
GO_0005515 | Molecular function | protein binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | C1D |
Protein name | Nuclear nucleic acid-binding protein C1D (hC1D) Nuclear nucleic acid-binding protein C1D |
Synonyms | |
Description | FUNCTION: Plays a role in the recruitment of the RNA exosome complex to pre-rRNA to mediate the 3'-5' end processing of the 5.8S rRNA; this function may include MPHOSPH6. Can activate PRKDC not only in the presence of linear DNA but also in the presence of supercoiled DNA. Can induce apoptosis in a p53/TP53 dependent manner. May regulate the TRAX/TSN complex formation. Potentiates transcriptional repression by NR1D1 and THRB (By similarity). . FUNCTION: Plays a role in the recruitment of the exosome to pre-rRNA to mediate the 3'-5' end processing of the 5.8S rRNA. . |
Accessions | J3KPZ4 ENST00000409302.1 ENST00000355848.7 ENST00000410067.8 ENST00000407324.5 Q13901 |