Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 14 studies | 25% ± 8% | |
peripheral blood | 11 studies | 22% ± 6% | |
brain | 7 studies | 26% ± 10% | |
kidney | 5 studies | 22% ± 4% | |
eye | 4 studies | 24% ± 8% | |
pancreas | 3 studies | 45% ± 6% | |
placenta | 3 studies | 25% ± 2% | |
bone marrow | 3 studies | 16% ± 0% | |
intestine | 3 studies | 24% ± 9% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
pancreas | 100% | 4421.86 | 328 / 328 | 100% | 114.86 | 178 / 178 |
skin | 100% | 7855.12 | 1809 / 1809 | 100% | 198.66 | 472 / 472 |
esophagus | 100% | 6184.90 | 1444 / 1445 | 100% | 86.61 | 183 / 183 |
thymus | 100% | 9290.49 | 653 / 653 | 100% | 151.34 | 604 / 605 |
lung | 100% | 11805.28 | 578 / 578 | 100% | 113.52 | 1153 / 1155 |
kidney | 100% | 9933.96 | 89 / 89 | 100% | 119.19 | 899 / 901 |
ovary | 100% | 6782.74 | 180 / 180 | 100% | 113.14 | 429 / 430 |
stomach | 100% | 5927.45 | 359 / 359 | 100% | 101.83 | 285 / 286 |
brain | 100% | 10419.27 | 2632 / 2642 | 100% | 132.75 | 705 / 705 |
intestine | 100% | 6303.92 | 966 / 966 | 100% | 105.28 | 525 / 527 |
prostate | 100% | 7709.51 | 245 / 245 | 100% | 215.67 | 500 / 502 |
uterus | 100% | 6328.90 | 170 / 170 | 100% | 110.09 | 457 / 459 |
breast | 100% | 6714.53 | 459 / 459 | 99% | 197.41 | 1112 / 1118 |
bladder | 100% | 6720.43 | 21 / 21 | 99% | 131.63 | 501 / 504 |
adrenal gland | 100% | 9994.09 | 258 / 258 | 99% | 236.33 | 228 / 230 |
liver | 100% | 3171.01 | 225 / 226 | 99% | 75.54 | 403 / 406 |
adipose | 100% | 6275.19 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 146.73 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 104.53 | 29 / 29 |
spleen | 100% | 11372.50 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 92.47 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 62.52 | 1 / 1 |
blood vessel | 100% | 7424.13 | 1334 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 100% | 9841.69 | 926 / 929 | 0% | 0 | 0 / 0 |
muscle | 99% | 3162.74 | 793 / 803 | 0% | 0 | 0 / 0 |
heart | 99% | 5808.94 | 850 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0048388 | Biological process | endosomal lumen acidification |
GO_0007042 | Biological process | lysosomal lumen acidification |
GO_0099638 | Biological process | endosome to plasma membrane protein transport |
GO_0051452 | Biological process | intracellular pH reduction |
GO_0097401 | Biological process | synaptic vesicle lumen acidification |
GO_0036295 | Biological process | cellular response to increased oxygen levels |
GO_0036035 | Biological process | osteoclast development |
GO_0006879 | Biological process | intracellular iron ion homeostasis |
GO_0007035 | Biological process | vacuolar acidification |
GO_0061795 | Biological process | Golgi lumen acidification |
GO_0030641 | Biological process | regulation of cellular pH |
GO_1902600 | Biological process | proton transmembrane transport |
GO_0005886 | Cellular component | plasma membrane |
GO_0016020 | Cellular component | membrane |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0030672 | Cellular component | synaptic vesicle membrane |
GO_0070062 | Cellular component | extracellular exosome |
GO_0033176 | Cellular component | proton-transporting V-type ATPase complex |
GO_0033116 | Cellular component | endoplasmic reticulum-Golgi intermediate compartment membrane |
GO_0000139 | Cellular component | Golgi membrane |
GO_0010008 | Cellular component | endosome membrane |
GO_0016469 | Cellular component | proton-transporting two-sector ATPase complex |
GO_0005765 | Cellular component | lysosomal membrane |
GO_0030665 | Cellular component | clathrin-coated vesicle membrane |
GO_0141109 | Molecular function | transporter activator activity |
GO_0001671 | Molecular function | ATPase activator activity |
GO_0031267 | Molecular function | small GTPase binding |
GO_0005515 | Molecular function | protein binding |
Gene name | ATP6AP1 |
Protein name | V-type proton ATPase subunit S1 (V-ATPase subunit S1) (Protein XAP-3) (V-ATPase Ac45 subunit) (V-ATPase S1 accessory protein) (Vacuolar proton pump subunit S1) ATPase H+ transporting accessory protein 1 |
Synonyms | ATP6S1 XAP3 ATP6IP1 VATPS1 |
Description | FUNCTION: Accessory subunit of the proton-transporting vacuolar (V)-ATPase protein pump, which is required for luminal acidification of secretory vesicles . Guides the V-type ATPase into specialized subcellular compartments, such as neuroendocrine regulated secretory vesicles or the ruffled border of the osteoclast, thereby regulating its activity . Involved in membrane trafficking and Ca(2+)-dependent membrane fusion . May play a role in the assembly of the V-type ATPase complex (Probable). In aerobic conditions, involved in intracellular iron homeostasis, thus triggering the activity of Fe(2+) prolyl hydroxylase (PHD) enzymes, and leading to HIF1A hydroxylation and subsequent proteasomal degradation . In islets of Langerhans cells, may regulate the acidification of dense-core secretory granules (By similarity). . |
Accessions | ENST00000677332.1 A6NLC6 A6QRJ1 ENST00000679241.1 ENST00000446552.1 ENST00000369762.7 H7C0T7 ENST00000455205.5 A0A7I2V2G3 A0A7I2V3T8 F2Z3L8 H7C2Y8 ENST00000422890.5 ENST00000429585.5 ENST00000439372.6 ENST00000619046.5 ENST00000677342.1 Q15904 A0A7I2YQA5 A0A0C4DGX8 ENST00000449556.5 |