Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 27 studies | 34% ± 16% | |
endothelial cell | 22 studies | 34% ± 18% | |
astrocyte | 20 studies | 45% ± 20% | |
mast cell | 19 studies | 26% ± 7% | |
smooth muscle cell | 17 studies | 24% ± 9% | |
ciliated cell | 16 studies | 36% ± 13% | |
oligodendrocyte | 16 studies | 43% ± 16% | |
oligodendrocyte precursor cell | 15 studies | 40% ± 15% | |
plasmacytoid dendritic cell | 14 studies | 25% ± 9% | |
glutamatergic neuron | 13 studies | 64% ± 28% | |
pericyte | 13 studies | 24% ± 10% | |
microglial cell | 12 studies | 31% ± 17% | |
GABAergic neuron | 11 studies | 61% ± 27% | |
endothelial cell of lymphatic vessel | 9 studies | 32% ± 15% | |
type I pneumocyte | 9 studies | 34% ± 10% | |
retinal cone cell | 9 studies | 83% ± 18% | |
retinal rod cell | 9 studies | 76% ± 19% | |
epithelial cell | 9 studies | 36% ± 18% | |
adipocyte | 9 studies | 40% ± 12% | |
neuron | 8 studies | 45% ± 22% | |
amacrine cell | 8 studies | 52% ± 18% | |
retina horizontal cell | 7 studies | 53% ± 19% | |
retinal ganglion cell | 7 studies | 60% ± 23% | |
myofibroblast cell | 7 studies | 28% ± 8% | |
type II pneumocyte | 7 studies | 41% ± 13% | |
connective tissue cell | 7 studies | 24% ± 8% | |
interneuron | 6 studies | 62% ± 33% | |
macrophage | 6 studies | 30% ± 10% | |
Mueller cell | 6 studies | 37% ± 21% | |
basal cell | 6 studies | 35% ± 21% | |
retinal bipolar neuron | 5 studies | 33% ± 11% | |
cardiac muscle cell | 5 studies | 46% ± 13% | |
mesothelial cell | 5 studies | 38% ± 11% | |
respiratory goblet cell | 5 studies | 31% ± 10% | |
abnormal cell | 5 studies | 30% ± 10% | |
dendritic cell | 5 studies | 20% ± 3% | |
club cell | 5 studies | 42% ± 13% | |
deuterosomal cell | 4 studies | 33% ± 6% | |
pancreatic A cell | 4 studies | 45% ± 18% | |
vein endothelial cell | 4 studies | 32% ± 22% | |
lymphocyte | 4 studies | 24% ± 6% | |
myeloid cell | 4 studies | 24% ± 3% | |
OFF-bipolar cell | 4 studies | 41% ± 15% | |
ON-bipolar cell | 4 studies | 43% ± 13% | |
gamma-delta T cell | 4 studies | 25% ± 8% | |
innate lymphoid cell | 4 studies | 34% ± 13% | |
natural killer cell | 4 studies | 19% ± 5% | |
muscle cell | 4 studies | 35% ± 25% | |
goblet cell | 4 studies | 37% ± 30% | |
ionocyte | 3 studies | 20% ± 4% | |
pancreatic D cell | 3 studies | 44% ± 23% | |
type B pancreatic cell | 3 studies | 57% ± 9% | |
B cell | 3 studies | 19% ± 4% | |
GABAergic interneuron | 3 studies | 67% ± 23% | |
glial cell | 3 studies | 28% ± 4% | |
plasma cell | 3 studies | 27% ± 5% | |
retinal pigment epithelial cell | 3 studies | 49% ± 31% | |
GABAergic amacrine cell | 3 studies | 54% ± 22% | |
glycinergic amacrine cell | 3 studies | 51% ± 16% | |
rod bipolar cell | 3 studies | 37% ± 12% | |
endothelial cell of vascular tree | 3 studies | 33% ± 14% | |
hepatocyte | 3 studies | 45% ± 22% | |
ependymal cell | 3 studies | 70% ± 16% | |
adventitial cell | 3 studies | 33% ± 4% | |
alveolar macrophage | 3 studies | 31% ± 7% | |
chondrocyte | 3 studies | 40% ± 24% | |
Schwann cell | 3 studies | 27% ± 11% | |
transit amplifying cell | 3 studies | 45% ± 32% | |
granule cell | 3 studies | 70% ± 13% | |
myoepithelial cell | 3 studies | 24% ± 10% | |
kidney loop of Henle epithelial cell | 3 studies | 21% ± 7% | |
renal principal cell | 3 studies | 35% ± 14% | |
mucus secreting cell | 3 studies | 23% ± 6% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 19 studies | 49% ± 24% | |
eye | 11 studies | 53% ± 21% | |
lung | 10 studies | 25% ± 9% | |
heart | 5 studies | 31% ± 12% | |
pancreas | 3 studies | 47% ± 5% | |
liver | 3 studies | 28% ± 15% | |
intestine | 3 studies | 20% ± 4% | |
adipose | 3 studies | 43% ± 14% | |
kidney | 3 studies | 26% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 2770.32 | 245 / 245 | 100% | 9.36 | 501 / 502 |
breast | 100% | 1848.76 | 459 / 459 | 99% | 9.66 | 1110 / 1118 |
brain | 99% | 3599.31 | 2627 / 2642 | 99% | 8.21 | 701 / 705 |
pancreas | 100% | 1497.31 | 328 / 328 | 98% | 6.83 | 175 / 178 |
esophagus | 99% | 1386.17 | 1434 / 1445 | 99% | 9.65 | 181 / 183 |
thymus | 100% | 1996.73 | 653 / 653 | 98% | 8.50 | 593 / 605 |
lung | 100% | 1758.13 | 576 / 578 | 98% | 6.60 | 1129 / 1155 |
adrenal gland | 100% | 2762.16 | 258 / 258 | 97% | 13.23 | 223 / 230 |
intestine | 100% | 1634.41 | 965 / 966 | 96% | 6.47 | 507 / 527 |
stomach | 100% | 1527.92 | 359 / 359 | 95% | 7.28 | 273 / 286 |
uterus | 100% | 2402.85 | 170 / 170 | 95% | 6.86 | 436 / 459 |
bladder | 100% | 1903.24 | 21 / 21 | 94% | 5.94 | 475 / 504 |
kidney | 100% | 1297.25 | 89 / 89 | 89% | 4.75 | 799 / 901 |
ovary | 100% | 2293.77 | 180 / 180 | 89% | 4.28 | 381 / 430 |
skin | 100% | 1403.57 | 1802 / 1809 | 85% | 6.20 | 399 / 472 |
liver | 94% | 775.14 | 212 / 226 | 41% | 1.57 | 167 / 406 |
adipose | 100% | 1630.58 | 1204 / 1204 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 2.18 | 1 / 1 |
blood vessel | 100% | 1649.98 | 1333 / 1335 | 0% | 0 | 0 / 0 |
spleen | 98% | 796.71 | 235 / 241 | 0% | 0 | 0 / 0 |
muscle | 93% | 860.18 | 750 / 803 | 0% | 0 | 0 / 0 |
heart | 92% | 973.89 | 788 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 91% | 4.36 | 41 / 45 |
lymph node | 0% | 0 | 0 / 0 | 86% | 3.40 | 25 / 29 |
eye | 0% | 0 | 0 / 0 | 59% | 3.41 | 47 / 80 |
peripheral blood | 18% | 202.47 | 168 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0060271 | Biological process | cilium assembly |
GO_0065001 | Biological process | specification of axis polarity |
GO_0035845 | Biological process | photoreceptor cell outer segment organization |
GO_0007169 | Biological process | cell surface receptor protein tyrosine kinase signaling pathway |
GO_0035844 | Biological process | cloaca development |
GO_0001947 | Biological process | heart looping |
GO_0044458 | Biological process | motile cilium assembly |
GO_0050795 | Biological process | regulation of behavior |
GO_0030862 | Biological process | positive regulation of polarized epithelial cell differentiation |
GO_0002092 | Biological process | positive regulation of receptor internalization |
GO_0016192 | Biological process | vesicle-mediated transport |
GO_0043066 | Biological process | negative regulation of apoptotic process |
GO_0007417 | Biological process | central nervous system development |
GO_0001738 | Biological process | morphogenesis of a polarized epithelium |
GO_0030902 | Biological process | hindbrain development |
GO_0008104 | Biological process | protein localization |
GO_0039008 | Biological process | pronephric nephron tubule morphogenesis |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0071599 | Biological process | otic vesicle development |
GO_0010842 | Biological process | retina layer formation |
GO_0036038 | Cellular component | MKS complex |
GO_0005813 | Cellular component | centrosome |
GO_0005814 | Cellular component | centriole |
GO_0005911 | Cellular component | cell-cell junction |
GO_0097730 | Cellular component | non-motile cilium |
GO_0005929 | Cellular component | cilium |
GO_0005829 | Cellular component | cytosol |
GO_0005912 | Cellular component | adherens junction |
GO_0036064 | Cellular component | ciliary basal body |
GO_0042802 | Molecular function | identical protein binding |
GO_0005515 | Molecular function | protein binding |
Gene name | AHI1 |
Protein name | Abelson helper integration site 1 Jouberin (Abelson helper integration site 1 protein homolog) (AHI-1) |
Synonyms | |
Description | FUNCTION: Involved in vesicle trafficking and required for ciliogenesis, formation of primary non-motile cilium, and recruitment of RAB8A to the basal body of primary cilium. Component of the tectonic-like complex, a complex localized at the transition zone of primary cilia and acting as a barrier that prevents diffusion of transmembrane proteins between the cilia and plasma membranes. Involved in neuronal differentiation. As a positive modulator of classical Wnt signaling, may play a crucial role in ciliary signaling during cerebellum embryonic development . . |
Accessions | ENST00000681522.1 [Q8N157-1] A0A7P0Z4K9 ENST00000679434.1 ENST00000679925.1 ENST00000524469.5 ENST00000475846.6 ENST00000680656.1 ENST00000531788.5 [Q8N157-3] ENST00000457866.6 [Q8N157-1] ENST00000367800.8 [Q8N157-1] H0Y343 ENST00000681365.1 [Q8N157-1] A0A7P0T9I7 ENST00000680337.1 H0YEF1 A0A7P0TBL6 E9PI51 ENST00000681340.1 [Q8N157-1] A0A7P0T8H6 ENST00000679450.1 A0A7P0TB12 ENST00000679476.1 ENST00000680119.1 ENST00000680033.1 ENST00000367799.7 ENST00000681718.1 ENST00000680965.1 ENST00000681841.1 [Q8N157-1] A0A7P0T9G0 ENST00000679672.1 ENST00000681828.1 ENST00000679589.1 H0YDL1 ENST00000265602.11 [Q8N157-1] A0A7P0T8M1 ENST00000679711.1 A0A7P0T9X6 A0A7P0TB99 ENST00000327035.10 [Q8N157-2] A0A7P0T880 E9PML3 ENST00000679943.1 A0A7P0T7Z8 ENST00000681022.1 [Q8N157-1] ENST00000680840.1 ENST00000681596.1 ENST00000679622.1 A0A7P0T959 A0A7P0T9M6 ENST00000681477.1 A0A7P0TAL4 ENST00000681670.1 A0A7P0Z493 Q9NQN3 A0A7P0TA48 ENST00000534469.1 A0A7P0T9D2 ENST00000680184.1 ENST00000488690.6 Q8N157 ENST00000681301.1 ENST00000680278.1 ENST00000680826.1 ENST00000681488.1 ENST00000680968.1 ENST00000679668.1 A0A7P0TBA0 ENST00000527681.2 ENST00000681860.1 A0A7P0T9Q2 ENST00000681756.1 ENST00000679742.1 |