TBRG1 report

Query

Invalid input gene. Please select from the suggestions.

I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
natural killer cell	20 studies	24% ± 7%	Explore
regulatory T cell	18 studies	27% ± 7%	Explore
B cell	16 studies	23% ± 7%	Explore
CD8-positive, alpha-beta T cell	15 studies	25% ± 7%	Explore
memory B cell	15 studies	24% ± 6%	Explore
T cell	14 studies	23% ± 7%	Explore
naive B cell	13 studies	27% ± 5%	Explore
CD16-positive, CD56-dim natural killer cell, human	12 studies	29% ± 8%	Explore
classical monocyte	12 studies	21% ± 6%	Explore
CD4-positive, alpha-beta T cell	12 studies	25% ± 6%	Explore
endothelial cell	12 studies	25% ± 6%	Explore
macrophage	12 studies	22% ± 5%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	11 studies	27% ± 8%	Explore
non-classical monocyte	11 studies	22% ± 6%	Explore
CD16-negative, CD56-bright natural killer cell, human	11 studies	25% ± 6%	Explore
fibroblast	11 studies	21% ± 4%	Explore
gamma-delta T cell	11 studies	30% ± 7%	Explore
CD8-positive, alpha-beta memory T cell	10 studies	27% ± 8%	Explore
mucosal invariant T cell	9 studies	27% ± 4%	Explore
plasmacytoid dendritic cell	9 studies	24% ± 6%	Explore
CD4-positive, alpha-beta memory T cell	8 studies	27% ± 7%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	8 studies	29% ± 7%	Explore
monocyte	7 studies	23% ± 10%	Explore
effector memory CD8-positive, alpha-beta T cell	7 studies	26% ± 7%	Explore
glutamatergic neuron	7 studies	45% ± 25%	Explore
mature NK T cell	7 studies	29% ± 5%	Explore
epithelial cell	6 studies	31% ± 11%	Explore
adipocyte	6 studies	23% ± 7%	Explore
microglial cell	6 studies	22% ± 6%	Explore
conventional dendritic cell	5 studies	28% ± 10%	Explore
ciliated cell	5 studies	22% ± 4%	Explore
T follicular helper cell	5 studies	27% ± 4%	Explore
effector CD8-positive, alpha-beta T cell	5 studies	24% ± 7%	Explore
astrocyte	5 studies	22% ± 5%	Explore
type I pneumocyte	5 studies	23% ± 5%	Explore
oligodendrocyte	5 studies	24% ± 5%	Explore
abnormal cell	5 studies	24% ± 8%	Explore
basal cell	5 studies	25% ± 11%	Explore
exhausted T cell	4 studies	29% ± 6%	Explore
neuron	4 studies	26% ± 6%	Explore
lymphocyte	4 studies	19% ± 4%	Explore
precursor B cell	4 studies	23% ± 5%	Explore
myeloid cell	4 studies	25% ± 5%	Explore
immature B cell	4 studies	23% ± 5%	Explore
mast cell	4 studies	24% ± 5%	Explore
endothelial cell of vascular tree	4 studies	20% ± 3%	Explore
type II pneumocyte	4 studies	25% ± 6%	Explore
GABAergic neuron	4 studies	41% ± 15%	Explore
oligodendrocyte precursor cell	4 studies	25% ± 2%	Explore
dendritic cell	4 studies	29% ± 10%	Explore
goblet cell	4 studies	24% ± 11%	Explore
alveolar macrophage	4 studies	24% ± 8%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	4 studies	27% ± 4%	Explore
secretory cell	3 studies	20% ± 4%	Explore
plasmablast	3 studies	30% ± 13%	Explore
retinal ganglion cell	3 studies	46% ± 20%	Explore
retina horizontal cell	3 studies	20% ± 3%	Explore
innate lymphoid cell	3 studies	24% ± 6%	Explore
effector CD4-positive, alpha-beta T cell	3 studies	25% ± 9%	Explore
myofibroblast cell	3 studies	21% ± 2%	Explore
effector memory CD4-positive, alpha-beta T cell	3 studies	25% ± 3%	Explore
club cell	3 studies	26% ± 6%	Explore
smooth muscle cell	3 studies	18% ± 1%	Explore
group 3 innate lymphoid cell	3 studies	23% ± 6%	Explore
interneuron	3 studies	37% ± 17%	Explore
mononuclear phagocyte	3 studies	22% ± 5%	Explore
double negative thymocyte	3 studies	38% ± 7%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
peripheral blood	12 studies	24% ± 5%	Explore
brain	9 studies	33% ± 18%	Explore
lung	6 studies	21% ± 4%	Explore
lymph node	4 studies	20% ± 3%	Explore
intestine	3 studies	17% ± 1%	Explore
liver	3 studies	20% ± 4%	Explore
adipose	3 studies	23% ± 6%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
bladder	100%	2312.05	21 / 21	100%	10.66	504 / 504
breast	100%	2583.72	459 / 459	100%	9.61	1118 / 1118
esophagus	100%	2076.93	1445 / 1445	100%	11.17	183 / 183
intestine	100%	2537.50	966 / 966	100%	11.10	527 / 527
pancreas	100%	1689.98	328 / 328	100%	13.44	178 / 178
prostate	100%	3051.19	245 / 245	100%	17.21	502 / 502
stomach	100%	2007.77	359 / 359	100%	10.41	286 / 286
thymus	100%	2928.00	653 / 653	100%	12.69	605 / 605
lung	100%	3093.13	578 / 578	100%	12.00	1154 / 1155
uterus	100%	2368.98	170 / 170	100%	8.54	458 / 459
brain	100%	1951.33	2636 / 2642	100%	15.12	705 / 705
ovary	100%	2046.04	180 / 180	100%	7.87	429 / 430
kidney	100%	2051.93	89 / 89	100%	11.65	898 / 901
adrenal gland	100%	2644.50	258 / 258	100%	10.51	229 / 230
liver	100%	1654.12	226 / 226	99%	6.64	400 / 406
skin	100%	2222.88	1809 / 1809	98%	10.50	464 / 472
adipose	100%	2597.87	1204 / 1204	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	13.50	29 / 29
muscle	100%	1628.99	803 / 803	0%	0	0 / 0
spleen	100%	3667.28	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	6.44	45 / 45
ureter	0%	0	0 / 0	100%	5.90	1 / 1
blood vessel	100%	2396.94	1334 / 1335	0%	0	0 / 0
heart	98%	1265.35	848 / 861	0%	0	0 / 0
peripheral blood	97%	1490.95	905 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	91%	6.62	73 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0