Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 16 studies | 24% ± 7% | |
fibroblast | 14 studies | 23% ± 6% | |
glutamatergic neuron | 9 studies | 46% ± 20% | |
adipocyte | 9 studies | 32% ± 6% | |
basal cell | 9 studies | 27% ± 11% | |
oligodendrocyte | 9 studies | 30% ± 11% | |
GABAergic neuron | 7 studies | 39% ± 19% | |
oligodendrocyte precursor cell | 7 studies | 30% ± 13% | |
astrocyte | 7 studies | 32% ± 14% | |
epithelial cell | 6 studies | 35% ± 16% | |
pericyte | 6 studies | 23% ± 7% | |
type II pneumocyte | 6 studies | 25% ± 6% | |
smooth muscle cell | 6 studies | 20% ± 2% | |
neuron | 5 studies | 34% ± 14% | |
type I pneumocyte | 5 studies | 22% ± 5% | |
macrophage | 5 studies | 24% ± 8% | |
interneuron | 5 studies | 45% ± 24% | |
microglial cell | 5 studies | 27% ± 8% | |
naive B cell | 4 studies | 18% ± 2% | |
mesothelial cell | 4 studies | 29% ± 12% | |
vein endothelial cell | 4 studies | 25% ± 11% | |
ciliated cell | 4 studies | 25% ± 8% | |
retinal cone cell | 4 studies | 33% ± 14% | |
abnormal cell | 4 studies | 26% ± 13% | |
endothelial cell of lymphatic vessel | 4 studies | 25% ± 4% | |
endothelial cell of vascular tree | 4 studies | 22% ± 9% | |
dendritic cell | 4 studies | 22% ± 5% | |
myofibroblast cell | 4 studies | 21% ± 6% | |
CD4-positive, alpha-beta T cell | 3 studies | 24% ± 11% | |
hematopoietic precursor cell | 3 studies | 20% ± 5% | |
naive thymus-derived CD8-positive, alpha-beta T cell | 3 studies | 16% ± 1% | |
lymphocyte | 3 studies | 24% ± 2% | |
myeloid cell | 3 studies | 22% ± 5% | |
retinal rod cell | 3 studies | 37% ± 9% | |
hepatocyte | 3 studies | 37% ± 28% | |
muscle cell | 3 studies | 26% ± 8% | |
connective tissue cell | 3 studies | 19% ± 3% | |
intestinal crypt stem cell | 3 studies | 22% ± 6% | |
club cell | 3 studies | 26% ± 4% | |
respiratory goblet cell | 3 studies | 24% ± 9% | |
monocyte | 3 studies | 17% ± 1% | |
transit amplifying cell | 3 studies | 32% ± 16% | |
granule cell | 3 studies | 26% ± 6% | |
CD8-positive, alpha-beta T cell | 3 studies | 27% ± 8% | |
mast cell | 3 studies | 16% ± 1% | |
natural killer cell | 3 studies | 22% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 2014.12 | 459 / 459 | 100% | 54.81 | 1118 / 1118 |
bladder | 100% | 1982.57 | 21 / 21 | 100% | 53.37 | 503 / 504 |
prostate | 100% | 1631.12 | 245 / 245 | 100% | 38.07 | 500 / 502 |
lung | 100% | 1977.84 | 577 / 578 | 100% | 45.86 | 1152 / 1155 |
uterus | 100% | 1660.85 | 170 / 170 | 100% | 55.92 | 457 / 459 |
ovary | 100% | 2092.99 | 180 / 180 | 100% | 33.82 | 428 / 430 |
intestine | 100% | 1489.06 | 966 / 966 | 99% | 60.62 | 524 / 527 |
stomach | 100% | 1175.15 | 359 / 359 | 99% | 52.66 | 284 / 286 |
thymus | 100% | 1489.85 | 653 / 653 | 99% | 28.55 | 600 / 605 |
esophagus | 100% | 1809.25 | 1444 / 1445 | 99% | 42.06 | 181 / 183 |
pancreas | 100% | 1073.91 | 328 / 328 | 98% | 33.46 | 175 / 178 |
kidney | 100% | 2073.11 | 89 / 89 | 98% | 28.15 | 885 / 901 |
skin | 100% | 2286.35 | 1809 / 1809 | 97% | 53.09 | 456 / 472 |
liver | 100% | 1061.43 | 226 / 226 | 93% | 20.86 | 376 / 406 |
adrenal gland | 100% | 1743.59 | 258 / 258 | 91% | 19.67 | 209 / 230 |
brain | 80% | 362.97 | 2103 / 2642 | 96% | 18.28 | 674 / 705 |
adipose | 100% | 2040.63 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 64.72 | 29 / 29 |
spleen | 100% | 1821.84 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 23.59 | 1 / 1 |
blood vessel | 100% | 1418.94 | 1333 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 52.60 | 44 / 45 |
heart | 96% | 954.93 | 824 / 861 | 0% | 0 | 0 / 0 |
muscle | 94% | 757.85 | 754 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 94% | 53.39 | 75 / 80 |
peripheral blood | 51% | 1077.56 | 477 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0010835 | Biological process | regulation of protein ADP-ribosylation |
GO_0006417 | Biological process | regulation of translation |
GO_0005730 | Cellular component | nucleolus |
GO_0005694 | Cellular component | chromosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0003677 | Molecular function | DNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0003729 | Molecular function | mRNA binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | PUM3 |
Protein name | Pumilio RNA binding family member 3 Pumilio homolog 3 (HBV X-transactivated gene 5 protein) (HBV XAg-transactivated protein 5) (Minor histocompatibility antigen HA-8) (HLA-HA8) KIAA0020 protein |
Synonyms | XTP5 PUF-A cPERP-C KIAA0020 |
Description | FUNCTION: Inhibits the poly(ADP-ribosyl)ation activity of PARP1 and the degradation of PARP1 by CASP3 following genotoxic stress . Binds to double-stranded RNA or DNA without sequence specificity . Involved in development of the eye and of primordial germ cells (By similarity). . |
Accessions | ENST00000490444.2 Q9NYH5 S4R3K8 Q15397 ENST00000397885.3 |