Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 18 studies | 51% ± 20% | |
oligodendrocyte | 17 studies | 82% ± 24% | |
oligodendrocyte precursor cell | 15 studies | 72% ± 24% | |
glutamatergic neuron | 13 studies | 84% ± 22% | |
fibroblast | 13 studies | 33% ± 12% | |
GABAergic neuron | 11 studies | 77% ± 23% | |
microglial cell | 10 studies | 50% ± 18% | |
smooth muscle cell | 9 studies | 26% ± 10% | |
endothelial cell | 8 studies | 48% ± 21% | |
interneuron | 6 studies | 77% ± 15% | |
retinal ganglion cell | 6 studies | 73% ± 34% | |
amacrine cell | 6 studies | 61% ± 31% | |
podocyte | 5 studies | 60% ± 28% | |
neuron | 5 studies | 76% ± 8% | |
retinal bipolar neuron | 5 studies | 53% ± 31% | |
pericyte | 5 studies | 51% ± 17% | |
Mueller cell | 5 studies | 44% ± 22% | |
club cell | 5 studies | 38% ± 21% | |
type II pneumocyte | 5 studies | 48% ± 10% | |
epithelial cell | 4 studies | 39% ± 18% | |
granule cell | 4 studies | 84% ± 7% | |
OFF-bipolar cell | 4 studies | 81% ± 23% | |
ON-bipolar cell | 4 studies | 80% ± 24% | |
retinal cone cell | 4 studies | 64% ± 12% | |
retinal rod cell | 4 studies | 38% ± 11% | |
mesothelial cell | 4 studies | 38% ± 9% | |
cholangiocyte | 3 studies | 45% ± 16% | |
differentiation-committed oligodendrocyte precursor | 3 studies | 71% ± 11% | |
GABAergic interneuron | 3 studies | 84% ± 5% | |
progenitor cell | 3 studies | 60% ± 20% | |
cardiac muscle cell | 3 studies | 19% ± 2% | |
GABAergic amacrine cell | 3 studies | 73% ± 19% | |
glycinergic amacrine cell | 3 studies | 64% ± 21% | |
rod bipolar cell | 3 studies | 65% ± 20% | |
retinal pigment epithelial cell | 3 studies | 51% ± 19% | |
ependymal cell | 3 studies | 43% ± 23% | |
connective tissue cell | 3 studies | 42% ± 18% | |
type I pneumocyte | 3 studies | 22% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 8158.23 | 2640 / 2642 | 99% | 33.55 | 695 / 705 |
kidney | 92% | 2277.15 | 82 / 89 | 70% | 13.81 | 634 / 901 |
thymus | 88% | 1450.97 | 575 / 653 | 48% | 4.49 | 291 / 605 |
lung | 99% | 1917.19 | 571 / 578 | 28% | 3.33 | 327 / 1155 |
intestine | 59% | 1016.55 | 566 / 966 | 58% | 8.04 | 304 / 527 |
ovary | 100% | 4688.56 | 180 / 180 | 12% | 0.91 | 53 / 430 |
uterus | 86% | 1351.68 | 147 / 170 | 22% | 4.39 | 99 / 459 |
prostate | 64% | 721.74 | 156 / 245 | 38% | 2.89 | 193 / 502 |
liver | 70% | 644.31 | 158 / 226 | 24% | 2.20 | 97 / 406 |
blood vessel | 87% | 2162.60 | 1156 / 1335 | 0% | 0 | 0 / 0 |
bladder | 57% | 752.76 | 12 / 21 | 26% | 2.99 | 133 / 504 |
breast | 23% | 183.15 | 104 / 459 | 38% | 2.68 | 425 / 1118 |
adipose | 59% | 631.12 | 710 / 1204 | 0% | 0 | 0 / 0 |
esophagus | 35% | 361.90 | 508 / 1445 | 21% | 2.70 | 39 / 183 |
stomach | 9% | 64.66 | 31 / 359 | 44% | 7.44 | 126 / 286 |
heart | 44% | 391.02 | 377 / 861 | 0% | 0 | 0 / 0 |
pancreas | 14% | 121.03 | 45 / 328 | 29% | 1.68 | 52 / 178 |
adrenal gland | 6% | 68.56 | 16 / 258 | 31% | 2.80 | 71 / 230 |
skin | 12% | 101.61 | 218 / 1809 | 6% | 0.48 | 27 / 472 |
tonsil | 0% | 0 | 0 / 0 | 9% | 1.35 | 4 / 45 |
muscle | 5% | 55.70 | 44 / 803 | 0% | 0 | 0 / 0 |
spleen | 3% | 31.14 | 7 / 241 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 3% | 0.14 | 2 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0006470 | Biological process | protein dephosphorylation |
GO_0050804 | Biological process | modulation of chemical synaptic transmission |
GO_0046426 | Biological process | negative regulation of receptor signaling pathway via JAK-STAT |
GO_0061003 | Biological process | positive regulation of dendritic spine morphogenesis |
GO_0099560 | Biological process | synaptic membrane adhesion |
GO_0006796 | Biological process | phosphate-containing compound metabolic process |
GO_0050776 | Biological process | regulation of immune response |
GO_0030182 | Biological process | neuron differentiation |
GO_0007185 | Biological process | cell surface receptor protein tyrosine phosphatase signaling pathway |
GO_0099545 | Biological process | trans-synaptic signaling by trans-synaptic complex |
GO_0099054 | Biological process | presynapse assembly |
GO_0051965 | Biological process | positive regulation of synapse assembly |
GO_0007157 | Biological process | heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules |
GO_0097105 | Biological process | presynaptic membrane assembly |
GO_0099151 | Biological process | regulation of postsynaptic density assembly |
GO_0098978 | Cellular component | glutamatergic synapse |
GO_0098685 | Cellular component | Schaffer collateral - CA1 synapse |
GO_0005886 | Cellular component | plasma membrane |
GO_0070062 | Cellular component | extracellular exosome |
GO_0098686 | Cellular component | hippocampal mossy fiber to CA3 synapse |
GO_0042734 | Cellular component | presynaptic membrane |
GO_0005001 | Molecular function | transmembrane receptor protein tyrosine phosphatase activity |
GO_0005102 | Molecular function | signaling receptor binding |
GO_0050839 | Molecular function | cell adhesion molecule binding |
GO_0005515 | Molecular function | protein binding |
GO_0004725 | Molecular function | protein tyrosine phosphatase activity |
Gene name | PTPRD |
Protein name | Rceptor-type tyrosine-protein phosphatase delta protein-tyrosine-phosphatase (EC 3.1.3.48) Receptor-type tyrosine-protein phosphatase delta (Protein-tyrosine phosphatase delta) (R-PTP-delta) (EC 3.1.3.48) Protein tyrosine phosphatase receptor type D |
Synonyms | |
Description | FUNCTION: Can bidirectionally induce pre- and post-synaptic differentiation of neurons by mediating interaction with IL1RAP and IL1RAPL1 trans-synaptically. Involved in pre-synaptic differentiation through interaction with SLITRK2. . |
Accessions | ENST00000637354.1 ENST00000355233.9 [P23468-6] ENST00000481079.1 P23468 ENST00000356435.9 [P23468-1] ENST00000463477.5 Q2HXI4 A0A1Y0ZSN9 ENST00000537002.5 ENST00000397606.7 [P23468-4] ENST00000381196.9 [P23468-1] ENST00000540109.5 [P23468-1] ENST00000397617.8 ENST00000397611.7 [P23468-7] C9J8S8 F5GWR7 A0A1B0GU15 C9J6E4 ENST00000486161.5 [P23468-5] Q3KPI9 A0A1Y0ZJV0 |