Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
bladder | 100% | 2057.62 | 21 / 21 | 100% | 29.56 | 504 / 504 |
intestine | 100% | 1966.87 | 966 / 966 | 100% | 29.60 | 527 / 527 |
prostate | 100% | 1920.69 | 245 / 245 | 100% | 27.75 | 502 / 502 |
stomach | 100% | 1366.85 | 359 / 359 | 100% | 26.79 | 286 / 286 |
uterus | 100% | 2365.18 | 170 / 170 | 100% | 32.12 | 459 / 459 |
lung | 100% | 1654.55 | 578 / 578 | 100% | 23.55 | 1154 / 1155 |
breast | 100% | 2237.54 | 459 / 459 | 100% | 33.52 | 1117 / 1118 |
ovary | 100% | 2362.21 | 180 / 180 | 100% | 22.02 | 429 / 430 |
thymus | 100% | 2023.29 | 653 / 653 | 100% | 31.98 | 603 / 605 |
brain | 100% | 1849.59 | 2633 / 2642 | 100% | 31.32 | 705 / 705 |
skin | 100% | 1948.42 | 1809 / 1809 | 99% | 30.41 | 467 / 472 |
esophagus | 100% | 1651.12 | 1445 / 1445 | 99% | 21.90 | 181 / 183 |
kidney | 100% | 1429.45 | 89 / 89 | 98% | 15.74 | 880 / 901 |
adrenal gland | 100% | 1904.88 | 258 / 258 | 97% | 23.24 | 224 / 230 |
pancreas | 98% | 831.11 | 321 / 328 | 99% | 23.22 | 176 / 178 |
liver | 100% | 738.07 | 225 / 226 | 92% | 11.78 | 373 / 406 |
adipose | 100% | 1924.91 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1872.65 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 35.56 | 29 / 29 |
muscle | 100% | 2100.54 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 2098.28 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 29.79 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 17.26 | 1 / 1 |
peripheral blood | 98% | 1921.99 | 910 / 929 | 0% | 0 | 0 / 0 |
heart | 96% | 1137.89 | 829 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 95% | 22.59 | 76 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0140694 | Biological process | non-membrane-bounded organelle assembly |
GO_0002218 | Biological process | activation of innate immune response |
GO_0048511 | Biological process | rhythmic process |
GO_0045892 | Biological process | negative regulation of DNA-templated transcription |
GO_0006355 | Biological process | regulation of DNA-templated transcription |
GO_0042752 | Biological process | regulation of circadian rhythm |
GO_0045087 | Biological process | innate immune response |
GO_0042382 | Cellular component | paraspeckles |
GO_0016363 | Cellular component | nuclear matrix |
GO_0016607 | Cellular component | nuclear speck |
GO_0001650 | Cellular component | fibrillar center |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0005515 | Molecular function | protein binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | PSPC1 |
Protein name | Paraspeckle component 1 Paraspeckle component 1 (Paraspeckle protein 1) |
Synonyms | PSP1 |
Description | FUNCTION: Regulates, cooperatively with NONO and SFPQ, androgen receptor-mediated gene transcription activity in Sertoli cell line (By similarity). Binds to poly(A), poly(G) and poly(U) RNA homopolymers. Regulates the circadian clock by repressing the transcriptional activator activity of the CLOCK-BMAL1 heterodimer (By similarity). Together with NONO, required for the formation of nuclear paraspeckles. Plays a role in the regulation of DNA virus-mediated innate immune response by assembling into the HDP-RNP complex, a complex that serves as a platform for IRF3 phosphorylation and subsequent innate immune response activation through the cGAS-STING pathway. . |
Accessions | ENST00000338910.9 [Q8WXF1-1] ENST00000492741.5 [Q8WXF1-2] Q8WXF1 ENST00000427943.1 ENST00000471658.5 [Q8WXF1-2] ENST00000619300.4 [Q8WXF1-1] ENST00000635562.1 X6RDA4 A0A0U1RQF9 |