HDLBP report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
fibroblast	40 studies	34% ± 13%	Explore
endothelial cell	32 studies	27% ± 11%	Explore
macrophage	30 studies	26% ± 9%	Explore
smooth muscle cell	23 studies	25% ± 6%	Explore
pericyte	22 studies	27% ± 13%	Explore
plasma cell	21 studies	47% ± 14%	Explore
ciliated cell	19 studies	51% ± 19%	Explore
epithelial cell	19 studies	38% ± 20%	Explore
basal cell	18 studies	36% ± 18%	Explore
classical monocyte	16 studies	25% ± 8%	Explore
connective tissue cell	15 studies	34% ± 14%	Explore
endothelial cell of lymphatic vessel	13 studies	26% ± 8%	Explore
non-classical monocyte	13 studies	25% ± 8%	Explore
monocyte	12 studies	23% ± 5%	Explore
plasmacytoid dendritic cell	12 studies	24% ± 8%	Explore
plasmablast	11 studies	49% ± 22%	Explore
club cell	11 studies	34% ± 13%	Explore
secretory cell	11 studies	33% ± 13%	Explore
myofibroblast cell	11 studies	33% ± 9%	Explore
goblet cell	11 studies	42% ± 18%	Explore
myeloid cell	11 studies	30% ± 10%	Explore
mast cell	10 studies	24% ± 6%	Explore
type II pneumocyte	10 studies	33% ± 13%	Explore
dendritic cell	10 studies	25% ± 14%	Explore
adipocyte	10 studies	25% ± 7%	Explore
astrocyte	10 studies	26% ± 11%	Explore
oligodendrocyte	10 studies	25% ± 9%	Explore
type I pneumocyte	9 studies	30% ± 11%	Explore
conventional dendritic cell	9 studies	28% ± 11%	Explore
mesothelial cell	9 studies	29% ± 13%	Explore
vein endothelial cell	9 studies	23% ± 10%	Explore
microglial cell	9 studies	26% ± 8%	Explore
respiratory goblet cell	8 studies	46% ± 14%	Explore
IgA plasma cell	8 studies	43% ± 11%	Explore
IgG plasma cell	8 studies	39% ± 10%	Explore
oligodendrocyte precursor cell	8 studies	25% ± 9%	Explore
T cell	7 studies	19% ± 5%	Explore
glutamatergic neuron	7 studies	37% ± 25%	Explore
alveolar macrophage	6 studies	25% ± 9%	Explore
progenitor cell	6 studies	25% ± 8%	Explore
abnormal cell	6 studies	42% ± 15%	Explore
neuron	6 studies	38% ± 20%	Explore
endothelial cell of artery	6 studies	19% ± 3%	Explore
lymphocyte	6 studies	25% ± 7%	Explore
natural killer cell	6 studies	18% ± 3%	Explore
hematopoietic precursor cell	5 studies	28% ± 4%	Explore
CD4-positive, alpha-beta memory T cell	5 studies	18% ± 2%	Explore
CD8-positive, alpha-beta memory T cell	5 studies	19% ± 1%	Explore
kidney loop of Henle epithelial cell	5 studies	24% ± 4%	Explore
transit amplifying cell	5 studies	32% ± 19%	Explore
brush cell	5 studies	27% ± 9%	Explore
adventitial cell	5 studies	32% ± 7%	Explore
mucus secreting cell	5 studies	51% ± 20%	Explore
endothelial cell of vascular tree	5 studies	25% ± 6%	Explore
hepatocyte	5 studies	51% ± 21%	Explore
GABAergic neuron	5 studies	38% ± 19%	Explore
deuterosomal cell	4 studies	42% ± 12%	Explore
duct epithelial cell	4 studies	44% ± 14%	Explore
ionocyte	4 studies	34% ± 8%	Explore
squamous epithelial cell	4 studies	43% ± 20%	Explore
pancreatic A cell	4 studies	53% ± 25%	Explore
epithelial cell of proximal tubule	4 studies	20% ± 3%	Explore
glial cell	4 studies	26% ± 13%	Explore
hematopoietic stem cell	4 studies	23% ± 5%	Explore
capillary endothelial cell	4 studies	23% ± 5%	Explore
cardiac muscle cell	4 studies	17% ± 3%	Explore
mononuclear phagocyte	4 studies	26% ± 11%	Explore
CD8-positive, alpha-beta T cell	4 studies	19% ± 4%	Explore
erythroblast	4 studies	33% ± 11%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	30% ± 6%	Explore
luminal cell of prostate epithelium	4 studies	33% ± 5%	Explore
enteroendocrine cell	4 studies	27% ± 11%	Explore
B cell	4 studies	23% ± 8%	Explore
gamma-delta T cell	4 studies	25% ± 10%	Explore
interneuron	4 studies	34% ± 21%	Explore
hillock cell	3 studies	31% ± 14%	Explore
type B pancreatic cell	3 studies	66% ± 20%	Explore
CD4-positive, alpha-beta T cell	3 studies	21% ± 4%	Explore
kidney distal convoluted tubule epithelial cell	3 studies	20% ± 3%	Explore
neural crest cell	3 studies	22% ± 8%	Explore
retinal ganglion cell	3 studies	46% ± 19%	Explore
extravillous trophoblast	3 studies	47% ± 16%	Explore
placental villous trophoblast	3 studies	50% ± 19%	Explore
common myeloid progenitor	3 studies	27% ± 10%	Explore
retina horizontal cell	3 studies	22% ± 2%	Explore
retinal cone cell	3 studies	31% ± 8%	Explore
retinal pigment epithelial cell	3 studies	42% ± 11%	Explore
serous secreting cell	3 studies	44% ± 0%	Explore
intermediate monocyte	3 studies	33% ± 10%	Explore
myoepithelial cell	3 studies	30% ± 10%	Explore
muscle cell	3 studies	38% ± 9%	Explore
acinar cell	3 studies	67% ± 25%	Explore
pancreatic ductal cell	3 studies	53% ± 28%	Explore
enterocyte	3 studies	23% ± 4%	Explore
leukocyte	3 studies	22% ± 6%	Explore
group 3 innate lymphoid cell	3 studies	31% ± 10%	Explore
keratinocyte	3 studies	21% ± 4%	Explore
progenitor cell of mammary luminal epithelium	3 studies	25% ± 8%	Explore
regulatory T cell	3 studies	18% ± 3%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
lung	16 studies	31% ± 14%	Explore
brain	12 studies	30% ± 16%	Explore
intestine	10 studies	23% ± 10%	Explore
peripheral blood	7 studies	20% ± 4%	Explore
kidney	5 studies	20% ± 2%	Explore
liver	5 studies	36% ± 19%	Explore
pancreas	4 studies	55% ± 25%	Explore
bone marrow	4 studies	28% ± 11%	Explore
eye	4 studies	28% ± 10%	Explore
uterus	4 studies	34% ± 19%	Explore
breast	4 studies	23% ± 5%	Explore
adipose	4 studies	26% ± 6%	Explore
placenta	3 studies	44% ± 12%	Explore
heart	3 studies	20% ± 2%	Explore
esophagus	3 studies	33% ± 24%	Explore
prostate	3 studies	22% ± 4%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	23728.90	1445 / 1445	100%	170.85	183 / 183
pancreas	100%	53460.99	328 / 328	100%	176.95	178 / 178
prostate	100%	35159.91	245 / 245	100%	330.76	502 / 502
lung	100%	27827.66	578 / 578	100%	186.18	1153 / 1155
breast	100%	25354.58	459 / 459	100%	226.15	1116 / 1118
ovary	100%	27052.93	180 / 180	100%	164.30	429 / 430
liver	100%	25076.71	226 / 226	100%	131.38	405 / 406
skin	100%	38996.15	1808 / 1809	100%	209.29	471 / 472
stomach	100%	29969.30	359 / 359	100%	160.54	285 / 286
intestine	100%	24322.24	966 / 966	100%	168.99	525 / 527
thymus	100%	27190.91	653 / 653	100%	144.82	602 / 605
uterus	100%	27900.89	170 / 170	99%	151.87	456 / 459
bladder	100%	25381.38	21 / 21	99%	139.20	498 / 504
brain	99%	12914.21	2609 / 2642	100%	105.90	703 / 705
kidney	100%	21923.30	89 / 89	98%	113.36	886 / 901
adrenal gland	100%	32289.16	258 / 258	95%	104.14	218 / 230
adipose	100%	26845.78	1204 / 1204	0%	0	0 / 0
eye	0%	0	0 / 0	100%	205.85	80 / 80
lymph node	0%	0	0 / 0	100%	87.11	29 / 29
muscle	100%	41071.62	803 / 803	0%	0	0 / 0
spleen	100%	18957.03	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	154.93	45 / 45
ureter	0%	0	0 / 0	100%	86.54	1 / 1
blood vessel	100%	26765.40	1334 / 1335	0%	0	0 / 0
heart	97%	21785.06	839 / 861	0%	0	0 / 0
peripheral blood	91%	13247.98	848 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0