Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 10 studies | 29% ± 9% | |
kidney | 9 studies | 23% ± 5% | |
peripheral blood | 8 studies | 23% ± 7% | |
intestine | 8 studies | 22% ± 9% | |
eye | 7 studies | 26% ± 5% | |
brain | 7 studies | 32% ± 10% | |
heart | 6 studies | 27% ± 8% | |
liver | 6 studies | 29% ± 13% | |
pancreas | 3 studies | 40% ± 15% | |
adipose | 3 studies | 23% ± 9% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 9379.50 | 459 / 459 | 100% | 120.85 | 1118 / 1118 |
liver | 100% | 11437.50 | 226 / 226 | 100% | 130.07 | 406 / 406 |
esophagus | 100% | 10040.42 | 1444 / 1445 | 100% | 64.94 | 183 / 183 |
skin | 100% | 7707.11 | 1807 / 1809 | 100% | 130.76 | 472 / 472 |
kidney | 100% | 11692.66 | 89 / 89 | 100% | 146.36 | 900 / 901 |
intestine | 100% | 8799.44 | 966 / 966 | 100% | 76.61 | 526 / 527 |
bladder | 100% | 8210.81 | 21 / 21 | 100% | 98.10 | 503 / 504 |
ovary | 100% | 6310.90 | 180 / 180 | 100% | 68.96 | 429 / 430 |
uterus | 100% | 5436.51 | 170 / 170 | 100% | 96.30 | 457 / 459 |
stomach | 99% | 8184.34 | 357 / 359 | 100% | 66.90 | 286 / 286 |
prostate | 100% | 5597.55 | 244 / 245 | 100% | 125.49 | 501 / 502 |
lung | 99% | 6969.12 | 574 / 578 | 100% | 85.65 | 1155 / 1155 |
thymus | 100% | 6927.75 | 651 / 653 | 100% | 112.05 | 602 / 605 |
brain | 99% | 7881.99 | 2615 / 2642 | 100% | 164.97 | 705 / 705 |
adrenal gland | 100% | 20956.16 | 258 / 258 | 98% | 92.44 | 225 / 230 |
pancreas | 95% | 4557.94 | 313 / 328 | 100% | 76.20 | 178 / 178 |
adipose | 100% | 9733.38 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 115.26 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 83.87 | 29 / 29 |
muscle | 100% | 50047.23 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 7552.91 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 77.65 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 27.03 | 1 / 1 |
blood vessel | 99% | 6140.67 | 1328 / 1335 | 0% | 0 | 0 / 0 |
heart | 97% | 38442.41 | 839 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 87% | 4712.02 | 804 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0071222 | Biological process | cellular response to lipopolysaccharide |
GO_0010467 | Biological process | gene expression |
GO_0006635 | Biological process | fatty acid beta-oxidation |
GO_0005740 | Cellular component | mitochondrial envelope |
GO_0005741 | Cellular component | mitochondrial outer membrane |
GO_0016507 | Cellular component | mitochondrial fatty acid beta-oxidation multienzyme complex |
GO_0005739 | Cellular component | mitochondrion |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0042645 | Cellular component | mitochondrial nucleoid |
GO_0005743 | Cellular component | mitochondrial inner membrane |
GO_0003857 | Molecular function | 3-hydroxyacyl-CoA dehydrogenase activity |
GO_0003985 | Molecular function | acetyl-CoA C-acetyltransferase activity |
GO_0003988 | Molecular function | acetyl-CoA C-acyltransferase activity |
GO_0050633 | Molecular function | acetyl-CoA C-myristoyltransferase activity |
GO_0004300 | Molecular function | enoyl-CoA hydratase activity |
GO_0106222 | Molecular function | lncRNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | HADHB |
Protein name | Trifunctional enzyme subunit beta, mitochondrial (EC 2.3.1.155) (EC 2.3.1.16) (TP-beta) Trifunctional enzyme subunit beta, mitochondrial (TP-beta) [Includes: 3-ketoacyl-CoA thiolase (EC 2.3.1.155) (EC 2.3.1.16) (Acetyl-CoA acyltransferase) (Beta-ketothiolase)] Hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta |
Synonyms | MSTP029 |
Description | FUNCTION: Mitochondrial trifunctional enzyme catalyzes the last three of the four reactions of the mitochondrial beta-oxidation pathway . The mitochondrial beta-oxidation pathway is the major energy-producing process in tissues and is performed through four consecutive reactions breaking down fatty acids into acetyl-CoA . Among the enzymes involved in this pathway, the trifunctional enzyme exhibits specificity for long-chain fatty acids . Mitochondrial trifunctional enzyme is a heterotetrameric complex composed of two proteins, the trifunctional enzyme subunit alpha/HADHA carries the 2,3-enoyl-CoA hydratase and the 3-hydroxyacyl-CoA dehydrogenase activities, while the trifunctional enzyme subunit beta/HADHB described here bears the 3-ketoacyl-CoA thiolase activity . . |
Accessions | F5GZQ3 ENST00000537713.5 ENST00000448743.5 ENST00000317799.10 [P55084-1] C9JE81 P55084 C9JEY0 ENST00000545822.2 [P55084-2] B5MD38 ENST00000405867.7 C9K0M0 ENST00000425035.5 ENST00000412805.5 |