Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 4770.10 | 1445 / 1445 | 100% | 83.68 | 183 / 183 |
skin | 100% | 5040.26 | 1809 / 1809 | 100% | 144.49 | 472 / 472 |
thymus | 100% | 5523.51 | 653 / 653 | 100% | 157.63 | 605 / 605 |
brain | 100% | 5400.94 | 2638 / 2642 | 100% | 154.44 | 705 / 705 |
uterus | 100% | 6194.16 | 170 / 170 | 100% | 116.03 | 458 / 459 |
ovary | 100% | 7316.54 | 180 / 180 | 100% | 71.86 | 429 / 430 |
prostate | 100% | 5110.45 | 245 / 245 | 100% | 135.51 | 500 / 502 |
adrenal gland | 100% | 4495.75 | 258 / 258 | 100% | 125.77 | 229 / 230 |
kidney | 100% | 4206.16 | 89 / 89 | 99% | 106.33 | 896 / 901 |
intestine | 100% | 4793.51 | 966 / 966 | 99% | 114.72 | 524 / 527 |
bladder | 100% | 4577.71 | 21 / 21 | 99% | 107.35 | 501 / 504 |
breast | 100% | 4367.61 | 459 / 459 | 99% | 116.19 | 1111 / 1118 |
stomach | 100% | 4300.19 | 359 / 359 | 99% | 97.72 | 284 / 286 |
pancreas | 100% | 3986.10 | 327 / 328 | 99% | 105.40 | 177 / 178 |
liver | 100% | 1982.93 | 225 / 226 | 100% | 62.92 | 404 / 406 |
lung | 100% | 3945.60 | 576 / 578 | 99% | 91.75 | 1146 / 1155 |
adipose | 100% | 4142.95 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 206.46 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 149.68 | 29 / 29 |
spleen | 100% | 4504.66 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 114.33 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 70.81 | 1 / 1 |
blood vessel | 100% | 3900.99 | 1333 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 2520.64 | 795 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 98% | 3767.58 | 908 / 929 | 0% | 0 | 0 / 0 |
heart | 97% | 2471.53 | 837 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006366 | Biological process | transcription by RNA polymerase II |
GO_0009615 | Biological process | response to virus |
GO_0006368 | Biological process | transcription elongation by RNA polymerase II |
GO_0032968 | Biological process | positive regulation of transcription elongation by RNA polymerase II |
GO_0006367 | Biological process | transcription initiation at RNA polymerase II promoter |
GO_0032091 | Biological process | negative regulation of protein binding |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0005674 | Cellular component | transcription factor TFIIF complex |
GO_0032991 | Cellular component | protein-containing complex |
GO_0005669 | Cellular component | transcription factor TFIID complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0030054 | Cellular component | cell junction |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_1990841 | Molecular function | promoter-specific chromatin binding |
GO_0001091 | Molecular function | RNA polymerase II general transcription initiation factor binding |
GO_0019904 | Molecular function | protein domain specific binding |
GO_0001096 | Molecular function | TFIIF-class transcription factor complex binding |
GO_0019903 | Molecular function | protein phosphatase binding |
GO_0003723 | Molecular function | RNA binding |
GO_0016251 | Molecular function | RNA polymerase II general transcription initiation factor activity |
GO_0005515 | Molecular function | protein binding |
GO_0019211 | Molecular function | phosphatase activator activity |
Gene name | GTF2F1 |
Protein name | Transcription initiation factor IIF subunit alpha General transcription factor IIF subunit 1 (General transcription factor IIF 74 kDa subunit) (Transcription initiation factor IIF subunit alpha) (TFIIF-alpha) (Transcription initiation factor RAP74) |
Synonyms | RAP74 |
Description | FUNCTION: TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. . FUNCTION: TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. . FUNCTION: TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. . FUNCTION: TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. . FUNCTION: TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. . |
Accessions | ENST00000394456.10 ENST00000595047.5 M0QXD6 M0R0R9 ENST00000598607.1 Q6IBK5 P35269 ENST00000593678.5 M0R0Z3 |