Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 4245.79 | 459 / 459 | 100% | 60.07 | 1118 / 1118 |
esophagus | 100% | 4634.42 | 1445 / 1445 | 100% | 41.02 | 183 / 183 |
ovary | 100% | 3869.85 | 180 / 180 | 100% | 38.19 | 430 / 430 |
pancreas | 100% | 3636.73 | 328 / 328 | 100% | 42.41 | 178 / 178 |
prostate | 100% | 3908.46 | 245 / 245 | 100% | 54.35 | 502 / 502 |
stomach | 100% | 4585.14 | 359 / 359 | 100% | 44.83 | 286 / 286 |
brain | 100% | 5067.46 | 2640 / 2642 | 100% | 50.52 | 705 / 705 |
thymus | 100% | 4123.78 | 653 / 653 | 100% | 47.16 | 604 / 605 |
intestine | 100% | 4981.42 | 966 / 966 | 100% | 51.83 | 526 / 527 |
bladder | 100% | 4912.00 | 21 / 21 | 100% | 51.65 | 503 / 504 |
uterus | 100% | 4043.14 | 170 / 170 | 100% | 43.42 | 458 / 459 |
kidney | 100% | 4048.08 | 89 / 89 | 100% | 39.82 | 898 / 901 |
lung | 100% | 3960.71 | 576 / 578 | 100% | 46.40 | 1155 / 1155 |
skin | 100% | 5625.24 | 1809 / 1809 | 100% | 58.99 | 470 / 472 |
liver | 100% | 2738.56 | 226 / 226 | 99% | 22.87 | 401 / 406 |
adrenal gland | 100% | 7580.12 | 258 / 258 | 99% | 36.38 | 227 / 230 |
adipose | 100% | 4411.73 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 48.22 | 29 / 29 |
muscle | 100% | 11782.16 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 3859.01 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 41.58 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 33.09 | 1 / 1 |
blood vessel | 100% | 4757.47 | 1334 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 33.65 | 79 / 80 |
heart | 97% | 4909.27 | 839 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 76% | 2553.39 | 708 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0043484 | Biological process | regulation of RNA splicing |
GO_0000962 | Biological process | positive regulation of mitochondrial RNA catabolic process |
GO_0006397 | Biological process | mRNA processing |
GO_0009952 | Biological process | anterior/posterior pattern specification |
GO_0008033 | Biological process | tRNA processing |
GO_0016331 | Biological process | morphogenesis of embryonic epithelium |
GO_0000957 | Biological process | mitochondrial RNA catabolic process |
GO_0035770 | Cellular component | ribonucleoprotein granule |
GO_0005739 | Cellular component | mitochondrion |
GO_0005654 | Cellular component | nucleoplasm |
GO_1990904 | Cellular component | ribonucleoprotein complex |
GO_0005759 | Cellular component | mitochondrial matrix |
GO_0042645 | Cellular component | mitochondrial nucleoid |
GO_0005737 | Cellular component | cytoplasm |
GO_0003729 | Molecular function | mRNA binding |
GO_0002151 | Molecular function | G-quadruplex RNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | GRSF1 |
Protein name | G-rich RNA sequence binding factor 1 G-rich sequence factor 1 (GRSF-1) |
Synonyms | |
Description | FUNCTION: Regulator of post-transcriptional mitochondrial gene expression, required for assembly of the mitochondrial ribosome and for recruitment of mRNA and lncRNA. Binds RNAs containing the 14 base G-rich element. Preferentially binds RNAs transcribed from three contiguous genes on the light strand of mtDNA, the ND6 mRNA, and the long non-coding RNAs for MT-CYB and MT-ND5, each of which contains multiple consensus binding sequences . Involved in the degradosome-mediated decay of non-coding mitochondrial transcripts (MT-ncRNA) and tRNA-like molecules . Acts by unwinding G-quadruplex RNA structures in MT-ncRNA, thus facilitating their degradation by the degradosome . G-quadruplexes (G4) are non-canonical 4 stranded structures formed by transcripts from the light strand of mtDNA . . |
Accessions | ENST00000514161.5 ENST00000502323.5 [Q12849-5] H0YAM1 Q12849 ENST00000499044.6 H0Y8R1 H0YAK1 ENST00000254799.11 [Q12849-1] ENST00000506453.1 |