CCDC107 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
natural killer cell	29 studies	26% ± 7%	Explore
smooth muscle cell	25 studies	37% ± 10%	Explore
CD8-positive, alpha-beta T cell	25 studies	24% ± 8%	Explore
CD4-positive, alpha-beta T cell	21 studies	24% ± 7%	Explore
B cell	19 studies	21% ± 4%	Explore
pericyte	19 studies	31% ± 15%	Explore
T cell	16 studies	26% ± 9%	Explore
mature NK T cell	16 studies	28% ± 8%	Explore
regulatory T cell	16 studies	26% ± 6%	Explore
CD16-positive, CD56-dim natural killer cell, human	13 studies	28% ± 7%	Explore
gamma-delta T cell	13 studies	25% ± 7%	Explore
memory B cell	13 studies	19% ± 4%	Explore
mucosal invariant T cell	13 studies	29% ± 8%	Explore
macrophage	12 studies	23% ± 8%	Explore
fibroblast	11 studies	24% ± 8%	Explore
CD16-negative, CD56-bright natural killer cell, human	10 studies	27% ± 8%	Explore
myofibroblast cell	10 studies	25% ± 8%	Explore
CD8-positive, alpha-beta memory T cell	9 studies	25% ± 7%	Explore
plasmacytoid dendritic cell	9 studies	32% ± 9%	Explore
naive B cell	8 studies	23% ± 6%	Explore
effector CD8-positive, alpha-beta T cell	7 studies	23% ± 8%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	7 studies	23% ± 5%	Explore
effector memory CD8-positive, alpha-beta T cell	7 studies	26% ± 4%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	7 studies	18% ± 2%	Explore
conventional dendritic cell	6 studies	32% ± 12%	Explore
endothelial cell	6 studies	26% ± 7%	Explore
epithelial cell	6 studies	30% ± 12%	Explore
type I pneumocyte	6 studies	28% ± 7%	Explore
adipocyte	6 studies	26% ± 7%	Explore
ciliated cell	6 studies	26% ± 5%	Explore
CD4-positive, alpha-beta memory T cell	6 studies	27% ± 8%	Explore
leukocyte	5 studies	26% ± 7%	Explore
precursor B cell	5 studies	29% ± 6%	Explore
plasma cell	5 studies	24% ± 7%	Explore
effector CD4-positive, alpha-beta T cell	5 studies	29% ± 9%	Explore
effector memory CD4-positive, alpha-beta T cell	5 studies	28% ± 6%	Explore
innate lymphoid cell	5 studies	28% ± 4%	Explore
classical monocyte	4 studies	21% ± 6%	Explore
exhausted T cell	4 studies	35% ± 12%	Explore
retinal ganglion cell	4 studies	42% ± 26%	Explore
connective tissue cell	4 studies	26% ± 3%	Explore
enterocyte	4 studies	17% ± 2%	Explore
monocyte	4 studies	20% ± 4%	Explore
myeloid cell	4 studies	26% ± 12%	Explore
CD4-positive helper T cell	4 studies	23% ± 7%	Explore
neuron	4 studies	26% ± 13%	Explore
pancreatic A cell	3 studies	30% ± 10%	Explore
mononuclear phagocyte	3 studies	32% ± 7%	Explore
non-classical monocyte	3 studies	26% ± 3%	Explore
abnormal cell	3 studies	25% ± 2%	Explore
immature B cell	3 studies	26% ± 5%	Explore
Mueller cell	3 studies	19% ± 4%	Explore
glutamatergic neuron	3 studies	26% ± 5%	Explore
dendritic cell	3 studies	38% ± 15%	Explore
brush cell	3 studies	28% ± 16%	Explore
T follicular helper cell	3 studies	17% ± 1%	Explore
group 3 innate lymphoid cell	3 studies	39% ± 16%	Explore
T-helper 17 cell	3 studies	33% ± 2%	Explore
T-helper 1 cell	3 studies	27% ± 0%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	3 studies	28% ± 7%	Explore
double negative thymocyte	3 studies	22% ± 1%	Explore
basal cell	3 studies	25% ± 5%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
peripheral blood	9 studies	22% ± 7%	Explore
lung	6 studies	24% ± 5%	Explore
intestine	4 studies	20% ± 6%	Explore
eye	4 studies	19% ± 4%	Explore
uterus	4 studies	22% ± 6%	Explore
lymph node	4 studies	21% ± 7%	Explore
kidney	3 studies	23% ± 3%	Explore
liver	3 studies	22% ± 1%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
adrenal gland	100%	529.53	258 / 258	98%	8.11	225 / 230
prostate	99%	493.42	243 / 245	98%	6.54	494 / 502
ovary	97%	291.72	174 / 180	99%	9.91	426 / 430
stomach	100%	598.51	359 / 359	95%	8.06	273 / 286
intestine	100%	789.60	966 / 966	95%	7.27	501 / 527
uterus	99%	710.41	168 / 170	96%	6.02	439 / 459
skin	99%	335.59	1791 / 1809	95%	6.07	450 / 472
kidney	98%	306.40	87 / 89	96%	5.78	863 / 901
bladder	100%	673.24	21 / 21	93%	5.95	469 / 504
thymus	98%	322.49	638 / 653	94%	5.24	566 / 605
esophagus	97%	753.68	1396 / 1445	94%	5.02	172 / 183
brain	93%	251.97	2446 / 2642	98%	7.99	690 / 705
lung	99%	441.42	571 / 578	91%	5.41	1053 / 1155
pancreas	98%	362.84	321 / 328	92%	9.87	163 / 178
liver	90%	219.05	204 / 226	99%	8.34	402 / 406
breast	100%	762.24	459 / 459	79%	4.13	884 / 1118
adipose	100%	866.66	1204 / 1204	0%	0	0 / 0
blood vessel	100%	1406.25	1335 / 1335	0%	0	0 / 0
eye	0%	0	0 / 0	100%	11.64	80 / 80
lymph node	0%	0	0 / 0	100%	9.60	29 / 29
spleen	100%	360.12	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	3.90	45 / 45
ureter	0%	0	0 / 0	100%	4.89	1 / 1
muscle	98%	403.31	783 / 803	0%	0	0 / 0
heart	96%	554.26	829 / 861	0%	0	0 / 0
peripheral blood	72%	204.61	670 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0