ABLIM1 | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
endothelial cell	45 studies	40% ± 21%	Explore
astrocyte	20 studies	65% ± 23%	Explore
CD4-positive, alpha-beta T cell	18 studies	32% ± 12%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	16 studies	34% ± 11%	Explore
endothelial cell of lymphatic vessel	15 studies	40% ± 19%	Explore
natural killer cell	15 studies	19% ± 4%	Explore
fibroblast	15 studies	34% ± 14%	Explore
epithelial cell	14 studies	32% ± 15%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	13 studies	39% ± 10%	Explore
T cell	13 studies	25% ± 7%	Explore
naive B cell	13 studies	20% ± 3%	Explore
glutamatergic neuron	13 studies	55% ± 25%	Explore
CD8-positive, alpha-beta T cell	13 studies	31% ± 15%	Explore
type I pneumocyte	12 studies	46% ± 17%	Explore
CD16-negative, CD56-bright natural killer cell, human	12 studies	26% ± 7%	Explore
ciliated cell	12 studies	30% ± 11%	Explore
B cell	12 studies	18% ± 3%	Explore
vein endothelial cell	12 studies	39% ± 22%	Explore
basal cell	11 studies	28% ± 9%	Explore
GABAergic neuron	11 studies	54% ± 27%	Explore
endothelial cell of artery	11 studies	38% ± 15%	Explore
CD16-positive, CD56-dim natural killer cell, human	10 studies	21% ± 4%	Explore
mucosal invariant T cell	10 studies	22% ± 5%	Explore
gamma-delta T cell	10 studies	21% ± 4%	Explore
club cell	9 studies	24% ± 11%	Explore
oligodendrocyte precursor cell	9 studies	26% ± 12%	Explore
capillary endothelial cell	9 studies	39% ± 17%	Explore
CD4-positive, alpha-beta memory T cell	8 studies	28% ± 10%	Explore
CD8-positive, alpha-beta memory T cell	8 studies	24% ± 6%	Explore
endothelial cell of vascular tree	8 studies	39% ± 24%	Explore
goblet cell	8 studies	35% ± 26%	Explore
respiratory goblet cell	7 studies	43% ± 8%	Explore
secretory cell	7 studies	27% ± 12%	Explore
neuron	7 studies	36% ± 17%	Explore
regulatory T cell	7 studies	23% ± 8%	Explore
adipocyte	7 studies	37% ± 11%	Explore
smooth muscle cell	6 studies	40% ± 18%	Explore
interneuron	6 studies	53% ± 32%	Explore
retinal ganglion cell	6 studies	52% ± 18%	Explore
retina horizontal cell	6 studies	36% ± 20%	Explore
cardiac muscle cell	6 studies	87% ± 12%	Explore
Mueller cell	6 studies	53% ± 26%	Explore
retinal rod cell	6 studies	45% ± 29%	Explore
effector memory CD8-positive, alpha-beta T cell	5 studies	21% ± 3%	Explore
pericyte	5 studies	28% ± 15%	Explore
kidney loop of Henle epithelial cell	5 studies	43% ± 19%	Explore
memory B cell	5 studies	19% ± 5%	Explore
adventitial cell	5 studies	28% ± 4%	Explore
mucus secreting cell	5 studies	38% ± 5%	Explore
mesothelial cell	5 studies	43% ± 15%	Explore
type II pneumocyte	5 studies	23% ± 4%	Explore
mature NK T cell	5 studies	26% ± 8%	Explore
squamous epithelial cell	4 studies	53% ± 21%	Explore
cholangiocyte	4 studies	57% ± 20%	Explore
hepatocyte	4 studies	66% ± 25%	Explore
granule cell	4 studies	68% ± 17%	Explore
connective tissue cell	4 studies	25% ± 6%	Explore
retinal bipolar neuron	4 studies	30% ± 6%	Explore
lymphocyte	4 studies	32% ± 16%	Explore
abnormal cell	4 studies	29% ± 12%	Explore
kidney distal convoluted tubule epithelial cell	4 studies	47% ± 12%	Explore
pancreatic A cell	3 studies	49% ± 24%	Explore
effector CD4-positive, alpha-beta T cell	3 studies	23% ± 3%	Explore
GABAergic interneuron	3 studies	64% ± 10%	Explore
Purkinje cell	3 studies	50% ± 34%	Explore
microglial cell	3 studies	52% ± 12%	Explore
myofibroblast cell	3 studies	17% ± 1%	Explore
amacrine cell	3 studies	49% ± 31%	Explore
endocardial cell	3 studies	50% ± 11%	Explore
GABAergic amacrine cell	3 studies	36% ± 10%	Explore
ON-bipolar cell	3 studies	27% ± 10%	Explore
glycinergic amacrine cell	3 studies	22% ± 4%	Explore
retinal cone cell	3 studies	22% ± 2%	Explore
rod bipolar cell	3 studies	65% ± 17%	Explore
T follicular helper cell	3 studies	27% ± 13%	Explore
innate lymphoid cell	3 studies	26% ± 6%	Explore
effector memory CD4-positive, alpha-beta T cell	3 studies	26% ± 4%	Explore
ependymal cell	3 studies	58% ± 22%	Explore
enteroendocrine cell	3 studies	15% ± 0%	Explore
group 3 innate lymphoid cell	3 studies	22% ± 6%	Explore
keratinocyte	3 studies	31% ± 13%	Explore
renal principal cell	3 studies	30% ± 15%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
brain	18 studies	38% ± 21%	Explore
lung	8 studies	26% ± 8%	Explore
peripheral blood	8 studies	19% ± 3%	Explore
eye	8 studies	41% ± 21%	Explore
heart	6 studies	47% ± 17%	Explore
kidney	4 studies	38% ± 15%	Explore
liver	3 studies	38% ± 13%	Explore
esophagus	3 studies	31% ± 2%	Explore
adipose	3 studies	32% ± 8%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	27416.98	1445 / 1445	99%	95.63	181 / 183
thymus	100%	25060.23	653 / 653	98%	72.76	593 / 605
stomach	99%	12210.57	355 / 359	99%	57.34	282 / 286
ovary	100%	44131.52	180 / 180	96%	57.63	413 / 430
intestine	97%	9897.14	939 / 966	98%	61.75	519 / 527
kidney	100%	11510.30	89 / 89	95%	52.80	860 / 901
brain	97%	24487.09	2567 / 2642	98%	89.01	691 / 705
breast	100%	20092.68	457 / 459	95%	44.21	1061 / 1118
lung	98%	12295.34	567 / 578	96%	54.71	1105 / 1155
uterus	98%	11956.43	167 / 170	93%	57.32	426 / 459
bladder	100%	11616.33	21 / 21	89%	36.74	447 / 504
adrenal gland	97%	28999.88	251 / 258	72%	24.82	165 / 230
pancreas	53%	3147.34	174 / 328	98%	61.37	175 / 178
prostate	73%	5837.63	178 / 245	78%	20.52	391 / 502
liver	54%	3787.63	121 / 226	71%	21.75	288 / 406
skin	72%	18781.64	1305 / 1809	45%	13.88	211 / 472
ureter	0%	0	0 / 0	100%	11.08	1 / 1
adipose	100%	21639.87	1203 / 1204	0%	0	0 / 0
heart	99%	50069.35	853 / 861	0%	0	0 / 0
tonsil	0%	0	0 / 0	96%	68.76	43 / 45
muscle	95%	15329.14	761 / 803	0%	0	0 / 0
lymph node	0%	0	0 / 0	79%	28.25	23 / 29
blood vessel	65%	5114.86	868 / 1335	0%	0	0 / 0
eye	0%	0	0 / 0	50%	15.89	40 / 80
spleen	30%	1606.47	73 / 241	0%	0	0 / 0
peripheral blood	19%	1310.24	178 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0060271	Biological process	cilium assembly
GO_0007601	Biological process	visual perception
GO_0007010	Biological process	cytoskeleton organization
GO_0030032	Biological process	lamellipodium assembly
GO_0009887	Biological process	animal organ morphogenesis
GO_0001725	Cellular component	stress fiber
GO_0015629	Cellular component	actin cytoskeleton
GO_0030027	Cellular component	lamellipodium
GO_0005737	Cellular component	cytoplasm
GO_0051015	Molecular function	actin filament binding
GO_0005515	Molecular function	protein binding
GO_0003779	Molecular function	actin binding
GO_0046872	Molecular function	metal ion binding

IV. Literature review

[source]

Gene name	ABLIM1
Protein name	Actin-binding LIM protein 1 (abLIM-1) (Actin-binding LIM protein family member 1) (Actin-binding double zinc finger protein) (LIMAB1) (Limatin) Actin binding LIM protein 1 (cDNA FLJ58674, highly similar to Actin-binding LIM protein 1) Actin-binding LIM protein 1 Actin binding LIM protein 1
Synonyms	KIAA0059 ABLIM LIMAB1
Description	FUNCTION: May act as scaffold protein (By similarity). May play a role in the development of the retina. Has been suggested to play a role in axon guidance. .
Accessions	ENST00000651092.1 A0A494C1P1 ENST00000707119.1 F8W8M4 ENST00000369256.6 [O14639-6] A0A9L9PY99 A0A3B3IS55 B7Z4H1 ENST00000649363.1 ENST00000533213 ENST00000533213.7 [O14639-1] H0Y7N6 ENST00000392955.7 [O14639-2] ENST00000651023.2 ENST00000392952.7 [O14639-5] F6XFR5 ENST00000440467.5 ENST00000428430.1 ENST00000369253.6 [O14639-4] O14639

ABLIM1 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review