ABCF1 | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
natural killer cell	20 studies	24% ± 6%	Explore
endothelial cell	15 studies	22% ± 6%	Explore
CD8-positive, alpha-beta T cell	12 studies	22% ± 5%	Explore
CD16-negative, CD56-bright natural killer cell, human	10 studies	22% ± 4%	Explore
gamma-delta T cell	10 studies	24% ± 11%	Explore
fibroblast	9 studies	22% ± 5%	Explore
CD16-positive, CD56-dim natural killer cell, human	9 studies	22% ± 4%	Explore
mature NK T cell	8 studies	19% ± 4%	Explore
T cell	7 studies	20% ± 4%	Explore
smooth muscle cell	7 studies	18% ± 3%	Explore
CD4-positive, alpha-beta T cell	7 studies	22% ± 5%	Explore
pericyte	7 studies	20% ± 4%	Explore
epithelial cell	7 studies	38% ± 21%	Explore
basal cell	7 studies	29% ± 12%	Explore
CD8-positive, alpha-beta memory T cell	7 studies	23% ± 4%	Explore
regulatory T cell	7 studies	21% ± 5%	Explore
B cell	6 studies	22% ± 3%	Explore
mast cell	6 studies	22% ± 4%	Explore
naive B cell	6 studies	24% ± 6%	Explore
effector memory CD8-positive, alpha-beta T cell	6 studies	23% ± 6%	Explore
mucosal invariant T cell	6 studies	18% ± 2%	Explore
macrophage	5 studies	22% ± 5%	Explore
type I pneumocyte	4 studies	20% ± 5%	Explore
classical monocyte	4 studies	27% ± 7%	Explore
effector CD8-positive, alpha-beta T cell	4 studies	23% ± 5%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	4 studies	24% ± 6%	Explore
hematopoietic precursor cell	4 studies	23% ± 9%	Explore
myeloid cell	4 studies	26% ± 10%	Explore
innate lymphoid cell	4 studies	22% ± 6%	Explore
memory B cell	4 studies	23% ± 6%	Explore
abnormal cell	4 studies	22% ± 6%	Explore
endothelial cell of lymphatic vessel	3 studies	34% ± 23%	Explore
pancreatic A cell	3 studies	32% ± 4%	Explore
leukocyte	3 studies	30% ± 3%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	3 studies	27% ± 7%	Explore
non-classical monocyte	3 studies	27% ± 4%	Explore
conventional dendritic cell	3 studies	30% ± 11%	Explore
plasmablast	3 studies	31% ± 12%	Explore
placental villous trophoblast	3 studies	27% ± 8%	Explore
precursor B cell	3 studies	20% ± 4%	Explore
retinal cone cell	3 studies	34% ± 10%	Explore
retinal rod cell	3 studies	21% ± 5%	Explore
ciliated cell	3 studies	44% ± 12%	Explore
secretory cell	3 studies	30% ± 18%	Explore
dendritic cell	3 studies	35% ± 14%	Explore
pancreatic ductal cell	3 studies	41% ± 18%	Explore
megakaryocyte-erythroid progenitor cell	3 studies	26% ± 9%	Explore
enteroendocrine cell	3 studies	22% ± 7%	Explore
goblet cell	3 studies	21% ± 2%	Explore
plasmacytoid dendritic cell	3 studies	24% ± 9%	Explore
erythroblast	3 studies	33% ± 13%	Explore
double negative thymocyte	3 studies	26% ± 10%	Explore
hepatocyte	3 studies	33% ± 12%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
lung	6 studies	27% ± 13%	Explore
peripheral blood	5 studies	26% ± 5%	Explore
liver	4 studies	29% ± 13%	Explore
pancreas	3 studies	31% ± 8%	Explore
brain	3 studies	20% ± 1%	Explore
bone marrow	3 studies	16% ± 0%	Explore
intestine	3 studies	23% ± 6%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	4912.64	1445 / 1445	100%	84.85	183 / 183
skin	100%	6481.50	1809 / 1809	100%	130.74	472 / 472
stomach	100%	4239.08	359 / 359	100%	71.79	286 / 286
breast	100%	4845.60	459 / 459	100%	82.91	1116 / 1118
prostate	100%	5040.96	245 / 245	100%	69.84	501 / 502
uterus	100%	5223.62	170 / 170	100%	96.26	458 / 459
ovary	100%	4055.13	180 / 180	100%	69.61	429 / 430
liver	100%	2983.12	226 / 226	100%	62.59	405 / 406
lung	100%	5010.59	578 / 578	100%	82.15	1152 / 1155
pancreas	100%	3088.42	327 / 328	100%	65.54	178 / 178
intestine	100%	5336.94	966 / 966	100%	78.36	525 / 527
thymus	100%	5172.97	653 / 653	100%	55.27	602 / 605
bladder	100%	5343.19	21 / 21	99%	82.22	501 / 504
brain	98%	2544.77	2595 / 2642	100%	78.86	705 / 705
kidney	100%	4260.64	89 / 89	98%	46.59	881 / 901
adrenal gland	100%	4278.19	258 / 258	94%	46.51	217 / 230
adipose	100%	4941.64	1204 / 1204	0%	0	0 / 0
blood vessel	100%	4202.52	1335 / 1335	0%	0	0 / 0
eye	0%	0	0 / 0	100%	112.22	80 / 80
lymph node	0%	0	0 / 0	100%	115.99	29 / 29
muscle	100%	9606.82	803 / 803	0%	0	0 / 0
spleen	100%	5179.38	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	103.64	45 / 45
ureter	0%	0	0 / 0	100%	62.33	1 / 1
heart	97%	3461.15	832 / 861	0%	0	0 / 0
peripheral blood	88%	3292.82	817 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0006412	Biological process	translation
GO_0006954	Biological process	inflammatory response
GO_0005635	Cellular component	nuclear envelope
GO_0005654	Cellular component	nucleoplasm
GO_0005829	Cellular component	cytosol
GO_0016020	Cellular component	membrane
GO_0008135	Molecular function	translation factor activity, RNA binding
GO_0005515	Molecular function	protein binding
GO_0016887	Molecular function	ATP hydrolysis activity
GO_0005524	Molecular function	ATP binding
GO_0003723	Molecular function	RNA binding

IV. Literature review

[source]

Gene name	ABCF1
Protein name	ABC50 protein (ATP-binding cassette, sub-family F (GCN20), member 1) ATP-binding cassette sub-family F member 1 (ATP-binding cassette 50) (TNF-alpha-stimulated ABC protein) ATP binding cassette subfamily F member 1 ABCF1 protein ATP-binding cassette sub-family F member 1 Alternative protein ABCF1
Synonyms	hCG_26012 ABC50
Description	FUNCTION: Isoform 2 is required for efficient Cap- and IRES-mediated mRNA translation initiation. Isoform 2 is not involved in the ribosome biogenesis. .
Accessions	ENST00000441688.5 ENST00000454094.2 ENST00000429395.5 Q5STZ8 ENST00000412443.6 [Q8NE71-2] A0PJ72 ENST00000457111.6 [Q8NE71-1] ENST00000416932.2 Q2L6I2 ENST00000376545.7 [Q8NE71-2] H0YGW7 ENST00000423247.6 [Q8NE71-1] F5GYK6 ENST00000426591.5 ENST00000424994.5 A0A0G2JIC2 ENST00000457078.6 [Q8NE71-1] ENST00000448939.6 [Q8NE71-2] ENST00000383587.8 [Q8NE71-2] ENST00000452530.6 [Q8NE71-2] A0A0G2JJB9 ENST00000418552.5 ENST00000441867.6 ENST00000423030.5 ENST00000457970.2 Q8NE71 ENST00000420257.6 [Q8NE71-2] ENST00000326195.13 [Q8NE71-1] ENST00000468958.1 ENST00000421608.2 ENST00000419893.6 [Q8NE71-1] ENST00000383588.8 [Q8NE71-1] ENST00000400609.3 ENST00000456791.2 ENST00000421042.6 [Q8NE71-2] ENST00000426219.6 [Q8NE71-1] L0R6B8 ENST00000475993.1

ABCF1 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review