YIPF4 report

Query

Invalid input gene. Please select from the suggestions.

I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
endothelial cell	28 studies	24% ± 9%	Explore
fibroblast	22 studies	22% ± 7%	Explore
pericyte	16 studies	21% ± 5%	Explore
natural killer cell	15 studies	20% ± 4%	Explore
macrophage	10 studies	23% ± 6%	Explore
smooth muscle cell	10 studies	26% ± 23%	Explore
CD8-positive, alpha-beta T cell	9 studies	20% ± 6%	Explore
oligodendrocyte	9 studies	27% ± 10%	Explore
B cell	8 studies	26% ± 10%	Explore
endothelial cell of lymphatic vessel	8 studies	20% ± 4%	Explore
classical monocyte	8 studies	23% ± 11%	Explore
glutamatergic neuron	8 studies	33% ± 19%	Explore
type I pneumocyte	7 studies	20% ± 3%	Explore
CD4-positive, alpha-beta T cell	7 studies	23% ± 8%	Explore
mature NK T cell	7 studies	18% ± 2%	Explore
epithelial cell	7 studies	38% ± 17%	Explore
ciliated cell	7 studies	28% ± 11%	Explore
monocyte	7 studies	20% ± 4%	Explore
T cell	7 studies	19% ± 4%	Explore
CD16-negative, CD56-bright natural killer cell, human	6 studies	19% ± 4%	Explore
non-classical monocyte	6 studies	26% ± 15%	Explore
capillary endothelial cell	6 studies	19% ± 2%	Explore
neuron	6 studies	31% ± 14%	Explore
goblet cell	6 studies	29% ± 10%	Explore
astrocyte	6 studies	28% ± 9%	Explore
GABAergic neuron	6 studies	33% ± 16%	Explore
oligodendrocyte precursor cell	6 studies	26% ± 12%	Explore
conventional dendritic cell	5 studies	29% ± 14%	Explore
effector memory CD8-positive, alpha-beta T cell	5 studies	20% ± 4%	Explore
myofibroblast cell	5 studies	21% ± 3%	Explore
connective tissue cell	5 studies	22% ± 7%	Explore
endothelial cell of artery	5 studies	20% ± 5%	Explore
myeloid cell	5 studies	25% ± 10%	Explore
dendritic cell	5 studies	31% ± 15%	Explore
regulatory T cell	5 studies	19% ± 4%	Explore
adipocyte	5 studies	23% ± 7%	Explore
gamma-delta T cell	5 studies	24% ± 14%	Explore
interneuron	5 studies	36% ± 19%	Explore
plasmacytoid dendritic cell	5 studies	26% ± 8%	Explore
microglial cell	5 studies	24% ± 7%	Explore
CD16-positive, CD56-dim natural killer cell, human	4 studies	21% ± 3%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	4 studies	20% ± 6%	Explore
abnormal cell	4 studies	24% ± 7%	Explore
naive B cell	4 studies	19% ± 4%	Explore
amacrine cell	4 studies	32% ± 9%	Explore
mast cell	4 studies	26% ± 13%	Explore
basal cell	4 studies	36% ± 11%	Explore
club cell	4 studies	22% ± 3%	Explore
retinal rod cell	4 studies	23% ± 5%	Explore
cardiac muscle cell	4 studies	21% ± 4%	Explore
mononuclear phagocyte	4 studies	25% ± 11%	Explore
lymphocyte	4 studies	25% ± 4%	Explore
enteroendocrine cell	4 studies	28% ± 11%	Explore
glomerular endothelial cell	3 studies	24% ± 6%	Explore
memory B cell	3 studies	17% ± 1%	Explore
retinal bipolar neuron	3 studies	33% ± 6%	Explore
retinal ganglion cell	3 studies	40% ± 17%	Explore
precursor B cell	3 studies	27% ± 8%	Explore
retina horizontal cell	3 studies	28% ± 8%	Explore
retinal cone cell	3 studies	39% ± 11%	Explore
Mueller cell	3 studies	22% ± 8%	Explore
rod bipolar cell	3 studies	24% ± 5%	Explore
endothelial cell of vascular tree	3 studies	22% ± 8%	Explore
innate lymphoid cell	3 studies	17% ± 2%	Explore
muscle cell	3 studies	23% ± 6%	Explore
type II pneumocyte	3 studies	20% ± 4%	Explore
intestinal crypt stem cell	3 studies	17% ± 0%	Explore
CD8-positive, alpha-beta memory T cell	3 studies	19% ± 3%	Explore
group 3 innate lymphoid cell	3 studies	24% ± 8%	Explore
mesothelial cell	3 studies	29% ± 14%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	11 studies	29% ± 13%	Explore
lung	8 studies	26% ± 9%	Explore
eye	7 studies	24% ± 8%	Explore
peripheral blood	5 studies	30% ± 12%	Explore
kidney	4 studies	16% ± 1%	Explore
heart	4 studies	18% ± 1%	Explore
pancreas	3 studies	23% ± 5%	Explore
intestine	3 studies	26% ± 11%	Explore
liver	3 studies	35% ± 12%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	100%	3081.37	2642 / 2642	100%	21.22	705 / 705
breast	100%	3204.49	459 / 459	100%	19.49	1118 / 1118
esophagus	100%	3108.69	1445 / 1445	100%	21.60	183 / 183
liver	100%	2400.46	226 / 226	100%	12.22	406 / 406
lung	100%	2935.81	578 / 578	100%	19.57	1155 / 1155
ovary	100%	3454.51	180 / 180	100%	19.77	430 / 430
pancreas	100%	3078.00	328 / 328	100%	17.86	178 / 178
prostate	100%	3067.11	245 / 245	100%	20.15	502 / 502
stomach	100%	2645.61	359 / 359	100%	19.29	286 / 286
thymus	100%	3598.97	653 / 653	100%	18.87	605 / 605
intestine	100%	3367.12	966 / 966	100%	18.93	526 / 527
bladder	100%	3232.00	21 / 21	100%	16.90	503 / 504
uterus	100%	3700.35	170 / 170	100%	17.01	458 / 459
kidney	100%	2432.30	89 / 89	100%	14.89	898 / 901
adrenal gland	100%	3226.29	258 / 258	100%	18.51	229 / 230
skin	100%	2950.28	1808 / 1809	97%	15.33	458 / 472
adipose	100%	3178.16	1204 / 1204	0%	0	0 / 0
blood vessel	100%	3193.50	1335 / 1335	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	10.95	29 / 29
muscle	100%	2615.45	803 / 803	0%	0	0 / 0
spleen	100%	3132.62	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	13.15	45 / 45
ureter	0%	0	0 / 0	100%	6.57	1 / 1
heart	100%	2626.47	858 / 861	0%	0	0 / 0
peripheral blood	95%	2600.68	886 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	91%	9.34	73 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0