TRAPPC3 report

Query

Invalid input gene. Please select from the suggestions.

I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
regulatory T cell	12 studies	21% ± 4%	Explore
CD4-positive, alpha-beta T cell	11 studies	19% ± 3%	Explore
natural killer cell	11 studies	19% ± 3%	Explore
endothelial cell	10 studies	26% ± 11%	Explore
CD8-positive, alpha-beta T cell	10 studies	19% ± 3%	Explore
classical monocyte	9 studies	22% ± 9%	Explore
non-classical monocyte	9 studies	22% ± 9%	Explore
fibroblast	9 studies	23% ± 9%	Explore
plasma cell	8 studies	28% ± 12%	Explore
macrophage	8 studies	23% ± 9%	Explore
epithelial cell	8 studies	36% ± 18%	Explore
basal cell	8 studies	28% ± 12%	Explore
conventional dendritic cell	7 studies	30% ± 16%	Explore
plasmacytoid dendritic cell	7 studies	23% ± 7%	Explore
CD16-negative, CD56-bright natural killer cell, human	6 studies	19% ± 2%	Explore
smooth muscle cell	6 studies	20% ± 4%	Explore
ciliated cell	6 studies	31% ± 11%	Explore
effector memory CD8-positive, alpha-beta T cell	5 studies	18% ± 1%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	5 studies	21% ± 4%	Explore
CD16-positive, CD56-dim natural killer cell, human	5 studies	18% ± 3%	Explore
pericyte	5 studies	19% ± 4%	Explore
B cell	5 studies	20% ± 6%	Explore
endothelial cell of vascular tree	5 studies	19% ± 2%	Explore
abnormal cell	5 studies	18% ± 2%	Explore
pancreatic A cell	4 studies	31% ± 8%	Explore
exhausted T cell	4 studies	24% ± 5%	Explore
monocyte	4 studies	21% ± 7%	Explore
T follicular helper cell	4 studies	17% ± 0%	Explore
effector CD4-positive, alpha-beta T cell	4 studies	22% ± 2%	Explore
effector CD8-positive, alpha-beta T cell	4 studies	22% ± 4%	Explore
CD4-positive, alpha-beta memory T cell	4 studies	21% ± 4%	Explore
plasmablast	3 studies	55% ± 14%	Explore
hematopoietic precursor cell	3 studies	29% ± 9%	Explore
mature NK T cell	3 studies	16% ± 0%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	3 studies	19% ± 1%	Explore
endothelial cell of artery	3 studies	16% ± 1%	Explore
retinal ganglion cell	3 studies	55% ± 27%	Explore
placental villous trophoblast	3 studies	22% ± 7%	Explore
myofibroblast cell	3 studies	18% ± 2%	Explore
astrocyte	3 studies	23% ± 9%	Explore
retina horizontal cell	3 studies	25% ± 11%	Explore
endothelial cell of lymphatic vessel	3 studies	26% ± 8%	Explore
type I pneumocyte	3 studies	27% ± 8%	Explore
GABAergic neuron	3 studies	29% ± 8%	Explore
glutamatergic neuron	3 studies	36% ± 12%	Explore
dendritic cell	3 studies	40% ± 13%	Explore
effector memory CD4-positive, alpha-beta T cell	3 studies	20% ± 3%	Explore
goblet cell	3 studies	22% ± 7%	Explore
secretory cell	3 studies	27% ± 9%	Explore
CD8-positive, alpha-beta memory T cell	3 studies	23% ± 7%	Explore
gamma-delta T cell	3 studies	32% ± 19%	Explore
T cell	3 studies	18% ± 3%	Explore
luminal hormone-sensing cell of mammary gland	3 studies	22% ± 1%	Explore
neuron	3 studies	27% ± 12%	Explore
connective tissue cell	3 studies	20% ± 5%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
peripheral blood	7 studies	21% ± 5%	Explore
lung	6 studies	26% ± 8%	Explore
brain	4 studies	23% ± 8%	Explore
pancreas	3 studies	37% ± 7%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
breast	100%	3045.70	459 / 459	100%	62.30	1118 / 1118
esophagus	100%	3381.30	1445 / 1445	100%	35.44	183 / 183
liver	100%	1637.30	226 / 226	100%	35.16	406 / 406
lung	100%	2657.73	578 / 578	100%	53.24	1155 / 1155
ovary	100%	1935.68	180 / 180	100%	63.32	430 / 430
pancreas	100%	1619.45	328 / 328	100%	48.48	178 / 178
prostate	100%	3161.10	245 / 245	100%	58.47	502 / 502
skin	100%	3395.29	1809 / 1809	100%	57.32	472 / 472
stomach	100%	2489.55	359 / 359	100%	39.22	286 / 286
thymus	100%	4392.29	653 / 653	100%	84.74	605 / 605
uterus	100%	2612.79	170 / 170	100%	68.52	459 / 459
kidney	100%	2800.40	89 / 89	100%	41.91	900 / 901
intestine	100%	3225.88	966 / 966	100%	43.57	526 / 527
bladder	100%	2988.14	21 / 21	100%	55.53	503 / 504
brain	100%	2233.64	2633 / 2642	100%	54.07	705 / 705
adrenal gland	100%	4590.41	258 / 258	99%	39.06	227 / 230
adipose	100%	2753.04	1204 / 1204	0%	0	0 / 0
eye	0%	0	0 / 0	100%	52.78	80 / 80
lymph node	0%	0	0 / 0	100%	62.14	29 / 29
spleen	100%	3228.62	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	62.71	45 / 45
ureter	0%	0	0 / 0	100%	57.48	1 / 1
blood vessel	100%	3020.66	1334 / 1335	0%	0	0 / 0
muscle	99%	1622.22	798 / 803	0%	0	0 / 0
heart	98%	2058.82	847 / 861	0%	0	0 / 0
peripheral blood	98%	2077.31	909 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0