Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 13832.26 | 1445 / 1445 | 100% | 40.99 | 183 / 183 |
prostate | 100% | 9401.64 | 245 / 245 | 100% | 72.26 | 500 / 502 |
intestine | 100% | 11080.84 | 966 / 966 | 99% | 34.38 | 520 / 527 |
bladder | 100% | 14035.76 | 21 / 21 | 99% | 46.57 | 497 / 504 |
lung | 100% | 13037.59 | 576 / 578 | 99% | 44.69 | 1140 / 1155 |
breast | 100% | 13871.62 | 459 / 459 | 98% | 44.09 | 1093 / 1118 |
skin | 99% | 8400.79 | 1794 / 1809 | 98% | 47.99 | 463 / 472 |
thymus | 100% | 7036.73 | 650 / 653 | 97% | 33.11 | 589 / 605 |
stomach | 98% | 9331.26 | 353 / 359 | 98% | 34.18 | 280 / 286 |
uterus | 100% | 13807.92 | 170 / 170 | 96% | 45.47 | 441 / 459 |
liver | 100% | 6866.95 | 226 / 226 | 94% | 38.72 | 383 / 406 |
kidney | 94% | 5321.90 | 84 / 89 | 97% | 42.45 | 874 / 901 |
brain | 92% | 5929.15 | 2418 / 2642 | 99% | 52.86 | 700 / 705 |
pancreas | 90% | 5117.11 | 294 / 328 | 98% | 55.85 | 175 / 178 |
ovary | 100% | 13075.52 | 180 / 180 | 83% | 17.76 | 358 / 430 |
adrenal gland | 88% | 3616.88 | 227 / 258 | 87% | 28.37 | 201 / 230 |
adipose | 100% | 14762.43 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 30321.27 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 11220.80 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 59.86 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 20.02 | 1 / 1 |
muscle | 98% | 10085.36 | 785 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 97% | 11035.88 | 905 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 97% | 45.77 | 28 / 29 |
eye | 0% | 0 | 0 / 0 | 96% | 20.88 | 77 / 80 |
heart | 91% | 6412.36 | 784 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007052 | Biological process | mitotic spindle organization |
GO_0051642 | Biological process | centrosome localization |
GO_0031022 | Biological process | nuclear migration along microfilament |
GO_0090292 | Biological process | nuclear matrix anchoring at nuclear membrane |
GO_0051321 | Biological process | meiotic cell cycle |
GO_0030335 | Biological process | positive regulation of cell migration |
GO_0007097 | Biological process | nuclear migration |
GO_0021817 | Biological process | nucleokinesis involved in cell motility in cerebral cortex radial glia guided migration |
GO_0005637 | Cellular component | nuclear inner membrane |
GO_0005635 | Cellular component | nuclear envelope |
GO_0034993 | Cellular component | meiotic nuclear membrane microtubule tethering complex |
GO_0010008 | Cellular component | endosome membrane |
GO_0000794 | Cellular component | condensed nuclear chromosome |
GO_0000781 | Cellular component | chromosome, telomeric region |
GO_0031965 | Cellular component | nuclear membrane |
GO_0043495 | Molecular function | protein-membrane adaptor activity |
GO_0042802 | Molecular function | identical protein binding |
GO_0005521 | Molecular function | lamin binding |
GO_0008017 | Molecular function | microtubule binding |
GO_0005515 | Molecular function | protein binding |
GO_0140444 | Molecular function | cytoskeleton-nuclear membrane anchor activity |
Gene name | SUN2 |
Protein name | Sad1 and UNC84 domain containing 2 SUN domain-containing protein 2 (Protein unc-84 homolog B) (Rab5-interacting protein) (Rab5IP) (Sad1/unc-84 protein-like 2) |
Synonyms | KIAA0668 UNC84B RAB5IP FRIGG |
Description | FUNCTION: As a component of the LINC (LInker of Nucleoskeleton and Cytoskeleton) complex, involved in the connection between the nuclear lamina and the cytoskeleton. The nucleocytoplasmic interactions established by the LINC complex play an important role in the transmission of mechanical forces across the nuclear envelope and in nuclear movement and positioning. Specifically, SYNE2 and SUN2 assemble in arrays of transmembrane actin-associated nuclear (TAN) lines which are bound to F-actin cables and couple the nucleus to retrograde actin flow during actin-dependent nuclear movement. Required for interkinetic nuclear migration (INM) and essential for nucleokinesis and centrosome-nucleus coupling during radial neuronal migration in the cerebral cortex and during glial migration. Required for nuclear migration in retinal photoreceptor progenitors implicating association with cytoplasmic dynein-dynactin and kinesin motor complexes, and probably B-type lamins; SUN1 and SUN2 seem to act redundantly. The SUN1/2:KASH5 LINC complex couples telomeres to microtubules during meiosis; SUN1 and SUN2 seem to act at least partial redundantly. Anchors chromosome movement in the prophase of meiosis and is involved in selective gene expression of coding and non-coding RNAs needed for gametogenesis. Required for telomere attachment to nuclear envelope and gametogenesis. May also function on endocytic vesicles as a receptor for RAB5-GDP and participate in the activation of RAB5. . |
Accessions | Q9UH99 ENST00000455125.2 B0QY66 ENST00000405018.5 [Q9UH99-2] ENST00000405510.5 [Q9UH99-1] ENST00000417332.5 ENST00000456894.6 B0QY67 ENST00000406622.5 [Q9UH99-1] B0QY68 ENST00000433561.5 ENST00000690927.1 B0QY64 ENST00000439339.1 ENST00000452294.5 A0A8I5QKM0 ENST00000689035.1 [Q9UH99-1] ENST00000438058.5 B0QY69 B0QY60 B0QY63 |