SMAP2 | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
B cell	44 studies	42% ± 19%	Explore
macrophage	39 studies	38% ± 19%	Explore
CD4-positive, alpha-beta T cell	30 studies	29% ± 12%	Explore
natural killer cell	29 studies	27% ± 11%	Explore
classical monocyte	25 studies	42% ± 15%	Explore
non-classical monocyte	24 studies	50% ± 16%	Explore
regulatory T cell	24 studies	35% ± 15%	Explore
T cell	23 studies	28% ± 12%	Explore
CD8-positive, alpha-beta T cell	23 studies	27% ± 11%	Explore
monocyte	21 studies	37% ± 18%	Explore
conventional dendritic cell	21 studies	36% ± 18%	Explore
dendritic cell	20 studies	46% ± 19%	Explore
memory B cell	20 studies	40% ± 18%	Explore
naive B cell	19 studies	43% ± 20%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	14 studies	37% ± 16%	Explore
microglial cell	14 studies	58% ± 18%	Explore
myeloid cell	13 studies	42% ± 14%	Explore
plasma cell	12 studies	39% ± 19%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	12 studies	31% ± 14%	Explore
CD16-negative, CD56-bright natural killer cell, human	12 studies	32% ± 15%	Explore
mature NK T cell	12 studies	28% ± 14%	Explore
CD16-positive, CD56-dim natural killer cell, human	11 studies	27% ± 12%	Explore
neutrophil	11 studies	37% ± 15%	Explore
effector memory CD8-positive, alpha-beta T cell	11 studies	38% ± 15%	Explore
mucosal invariant T cell	11 studies	28% ± 7%	Explore
gamma-delta T cell	11 studies	34% ± 18%	Explore
CD4-positive, alpha-beta memory T cell	10 studies	29% ± 16%	Explore
ciliated cell	10 studies	25% ± 10%	Explore
leukocyte	10 studies	42% ± 13%	Explore
glutamatergic neuron	10 studies	37% ± 27%	Explore
CD8-positive, alpha-beta memory T cell	10 studies	32% ± 16%	Explore
oligodendrocyte precursor cell	10 studies	30% ± 13%	Explore
innate lymphoid cell	8 studies	36% ± 14%	Explore
mononuclear phagocyte	7 studies	45% ± 20%	Explore
endothelial cell	7 studies	31% ± 9%	Explore
T follicular helper cell	7 studies	30% ± 14%	Explore
GABAergic neuron	7 studies	36% ± 20%	Explore
effector memory CD4-positive, alpha-beta T cell	6 studies	35% ± 17%	Explore
alveolar macrophage	5 studies	29% ± 11%	Explore
mast cell	5 studies	31% ± 11%	Explore
plasmablast	5 studies	28% ± 10%	Explore
plasmacytoid dendritic cell	5 studies	28% ± 9%	Explore
interneuron	5 studies	35% ± 22%	Explore
effector CD4-positive, alpha-beta T cell	4 studies	28% ± 8%	Explore
effector CD8-positive, alpha-beta T cell	4 studies	29% ± 6%	Explore
neuron	4 studies	25% ± 10%	Explore
immature B cell	4 studies	28% ± 8%	Explore
lymphocyte	4 studies	45% ± 17%	Explore
CD4-positive helper T cell	4 studies	45% ± 18%	Explore
oligodendrocyte	4 studies	24% ± 7%	Explore
double negative thymocyte	4 studies	28% ± 12%	Explore
monocyte-derived dendritic cell	3 studies	47% ± 21%	Explore
exhausted T cell	3 studies	25% ± 12%	Explore
hematopoietic precursor cell	3 studies	27% ± 4%	Explore
epithelial cell	3 studies	25% ± 6%	Explore
germinal center B cell	3 studies	28% ± 5%	Explore
intermediate monocyte	3 studies	75% ± 7%	Explore
IgA plasma cell	3 studies	43% ± 19%	Explore
IgG plasma cell	3 studies	40% ± 17%	Explore
group 3 innate lymphoid cell	3 studies	43% ± 19%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	25% ± 7%	Explore
abnormal cell	3 studies	34% ± 19%	Explore
erythrocyte	3 studies	26% ± 8%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
peripheral blood	17 studies	32% ± 14%	Explore
brain	12 studies	34% ± 18%	Explore
lung	8 studies	27% ± 10%	Explore
liver	5 studies	28% ± 11%	Explore
lymph node	4 studies	33% ± 11%	Explore
intestine	3 studies	22% ± 2%	Explore
bone marrow	3 studies	30% ± 13%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
liver	100%	3741.26	226 / 226	100%	62.52	406 / 406
lung	100%	7802.02	577 / 578	100%	60.08	1154 / 1155
breast	100%	3373.38	459 / 459	100%	61.96	1115 / 1118
prostate	100%	2708.64	244 / 245	100%	56.53	502 / 502
stomach	99%	3295.89	357 / 359	100%	45.01	286 / 286
bladder	100%	4288.95	21 / 21	99%	42.95	501 / 504
intestine	99%	5229.94	956 / 966	100%	43.89	527 / 527
skin	99%	3506.94	1793 / 1809	100%	69.55	471 / 472
uterus	99%	2284.89	169 / 170	99%	44.53	455 / 459
brain	98%	5643.81	2593 / 2642	100%	104.73	705 / 705
thymus	98%	2697.38	643 / 653	100%	59.38	603 / 605
esophagus	96%	2223.39	1393 / 1445	100%	44.97	183 / 183
adrenal gland	98%	2373.43	253 / 258	97%	40.01	222 / 230
kidney	88%	2154.06	78 / 89	97%	47.20	875 / 901
pancreas	82%	1423.52	270 / 328	99%	68.93	177 / 178
ovary	77%	1292.43	138 / 180	98%	33.64	421 / 430
adipose	100%	4848.35	1204 / 1204	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	262.73	29 / 29
peripheral blood	100%	57858.05	929 / 929	0%	0	0 / 0
spleen	100%	27099.63	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	64.13	45 / 45
ureter	0%	0	0 / 0	100%	16.69	1 / 1
blood vessel	98%	3199.07	1309 / 1335	0%	0	0 / 0
eye	0%	0	0 / 0	95%	31.45	76 / 80
heart	69%	1228.56	591 / 861	0%	0	0 / 0
muscle	60%	2134.19	479 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0005654	Cellular component	nucleoplasm
GO_0005829	Cellular component	cytosol
GO_0005737	Cellular component	cytoplasm
GO_0005515	Molecular function	protein binding
GO_0046872	Molecular function	metal ion binding
GO_0005096	Molecular function	GTPase activator activity

IV. Literature review

[source]

Gene name	SMAP2
Protein name	Small ArfGAP2 Stromal membrane-associated protein 2 (Stromal membrane-associated protein 1-like)
Synonyms	SMAP1L
Description	FUNCTION: GTPase activating protein that acts on ARF1. Can also activate ARF6 (in vitro). May play a role in clathrin-dependent retrograde transport from early endosomes to the trans-Golgi network (By similarity). .
Accessions	ENST00000372718.8 [Q8WU79-1] X6RCC3 ENST00000435168.6 A0A087WV97 ENST00000614549.4 ENST00000539317.2 [Q8WU79-3] Q8WU79 ENST00000372708.5 [Q8WU79-2]

SMAP2 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review