SELENOM report

Query

Invalid input gene. Please select from the suggestions.

I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
fibroblast	40 studies	62% ± 23%	Explore
pericyte	32 studies	60% ± 25%	Explore
endothelial cell	27 studies	40% ± 19%	Explore
smooth muscle cell	27 studies	64% ± 25%	Explore
plasma cell	16 studies	46% ± 21%	Explore
connective tissue cell	15 studies	62% ± 20%	Explore
endothelial cell of lymphatic vessel	14 studies	41% ± 14%	Explore
basal cell	14 studies	33% ± 15%	Explore
CD4-positive, alpha-beta T cell	12 studies	21% ± 4%	Explore
endothelial cell of vascular tree	12 studies	49% ± 16%	Explore
regulatory T cell	11 studies	20% ± 3%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	10 studies	24% ± 5%	Explore
endothelial cell of artery	10 studies	36% ± 11%	Explore
myofibroblast cell	10 studies	61% ± 23%	Explore
T cell	9 studies	20% ± 4%	Explore
CD8-positive, alpha-beta T cell	9 studies	17% ± 2%	Explore
memory B cell	9 studies	20% ± 6%	Explore
B cell	8 studies	22% ± 9%	Explore
goblet cell	8 studies	46% ± 23%	Explore
mucosal invariant T cell	8 studies	18% ± 3%	Explore
epithelial cell	8 studies	34% ± 16%	Explore
vein endothelial cell	8 studies	35% ± 11%	Explore
abnormal cell	7 studies	43% ± 26%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	7 studies	23% ± 3%	Explore
type II pneumocyte	6 studies	36% ± 14%	Explore
capillary endothelial cell	6 studies	34% ± 12%	Explore
kidney loop of Henle epithelial cell	6 studies	33% ± 12%	Explore
ciliated cell	6 studies	25% ± 5%	Explore
secretory cell	6 studies	31% ± 7%	Explore
mast cell	5 studies	21% ± 3%	Explore
renal alpha-intercalated cell	5 studies	55% ± 9%	Explore
astrocyte	5 studies	23% ± 8%	Explore
CD4-positive, alpha-beta memory T cell	5 studies	22% ± 3%	Explore
CD8-positive, alpha-beta memory T cell	5 studies	20% ± 3%	Explore
effector memory CD8-positive, alpha-beta T cell	5 studies	23% ± 5%	Explore
gamma-delta T cell	5 studies	17% ± 2%	Explore
glomerular endothelial cell	4 studies	53% ± 4%	Explore
IgA plasma cell	4 studies	39% ± 9%	Explore
IgG plasma cell	4 studies	39% ± 11%	Explore
retinal ganglion cell	4 studies	41% ± 28%	Explore
glial cell	4 studies	39% ± 21%	Explore
effector memory CD4-positive, alpha-beta T cell	4 studies	22% ± 7%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	79% ± 9%	Explore
brush cell	4 studies	35% ± 22%	Explore
T follicular helper cell	4 studies	23% ± 8%	Explore
type I pneumocyte	3 studies	22% ± 5%	Explore
club cell	3 studies	34% ± 17%	Explore
duct epithelial cell	3 studies	42% ± 12%	Explore
pancreatic A cell	3 studies	31% ± 3%	Explore
type B pancreatic cell	3 studies	31% ± 8%	Explore
neuron	3 studies	26% ± 5%	Explore
glycinergic amacrine cell	3 studies	24% ± 8%	Explore
kidney distal convoluted tubule epithelial cell	3 studies	69% ± 1%	Explore
renal principal cell	3 studies	70% ± 5%	Explore
extravillous trophoblast	3 studies	30% ± 3%	Explore
amacrine cell	3 studies	35% ± 13%	Explore
retina horizontal cell	3 studies	33% ± 6%	Explore
retinal pigment epithelial cell	3 studies	38% ± 28%	Explore
adventitial cell	3 studies	79% ± 2%	Explore
mesothelial cell	3 studies	42% ± 13%	Explore
mucus secreting cell	3 studies	72% ± 22%	Explore
Mueller cell	3 studies	49% ± 8%	Explore
plasmablast	3 studies	37% ± 9%	Explore
luminal cell of prostate epithelium	3 studies	44% ± 14%	Explore
Schwann cell	3 studies	51% ± 21%	Explore
melanocyte	3 studies	36% ± 16%	Explore
progenitor cell of mammary luminal epithelium	3 studies	37% ± 9%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
lung	11 studies	24% ± 10%	Explore
eye	8 studies	26% ± 12%	Explore
intestine	6 studies	27% ± 10%	Explore
kidney	5 studies	30% ± 13%	Explore
brain	4 studies	22% ± 6%	Explore
uterus	4 studies	43% ± 6%	Explore
breast	4 studies	49% ± 7%	Explore
pancreas	3 studies	33% ± 6%	Explore
peripheral blood	3 studies	16% ± 1%	Explore
prostate	3 studies	32% ± 7%	Explore
skin	3 studies	34% ± 16%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
prostate	100%	9491.06	244 / 245	99%	86.03	496 / 502
breast	100%	6650.31	458 / 459	97%	92.42	1079 / 1118
thymus	100%	6726.41	651 / 653	95%	81.94	574 / 605
lung	97%	4228.33	562 / 578	96%	62.05	1106 / 1155
ovary	100%	6631.24	180 / 180	86%	63.79	370 / 430
intestine	93%	9966.89	902 / 966	88%	40.41	462 / 527
uterus	99%	15493.95	169 / 170	81%	59.00	373 / 459
bladder	100%	12220.24	21 / 21	79%	47.58	399 / 504
kidney	94%	3791.74	84 / 89	78%	44.46	702 / 901
esophagus	82%	11683.26	1183 / 1445	88%	40.38	161 / 183
pancreas	69%	1842.53	227 / 328	97%	66.87	173 / 178
stomach	74%	6451.77	267 / 359	91%	50.88	259 / 286
brain	97%	3659.51	2558 / 2642	63%	20.41	441 / 705
adrenal gland	76%	2190.16	196 / 258	83%	88.03	190 / 230
skin	81%	2943.95	1471 / 1809	66%	32.45	311 / 472
blood vessel	100%	19499.71	1335 / 1335	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	17.85	1 / 1
adipose	99%	5768.29	1195 / 1204	0%	0	0 / 0
lymph node	0%	0	0 / 0	97%	50.45	28 / 29
spleen	84%	2413.85	203 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	80%	40.58	36 / 45
heart	70%	2935.70	607 / 861	0%	0	0 / 0
liver	4%	79.75	9 / 226	59%	37.77	241 / 406
muscle	46%	1281.81	368 / 803	0%	0	0 / 0
eye	0%	0	0 / 0	29%	6.07	23 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
peripheral blood	0%	0	0 / 929	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0