Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
liver | 100% | 21587.25 | 226 / 226 | 100% | 239.80 | 406 / 406 |
lung | 100% | 18163.41 | 578 / 578 | 100% | 321.17 | 1155 / 1155 |
ovary | 100% | 12111.48 | 180 / 180 | 100% | 195.47 | 430 / 430 |
pancreas | 100% | 30109.62 | 328 / 328 | 100% | 284.60 | 178 / 178 |
prostate | 100% | 18681.38 | 245 / 245 | 100% | 447.42 | 502 / 502 |
skin | 100% | 19647.03 | 1809 / 1809 | 100% | 342.65 | 472 / 472 |
stomach | 100% | 15523.86 | 359 / 359 | 100% | 233.57 | 286 / 286 |
uterus | 100% | 15026.24 | 170 / 170 | 100% | 346.88 | 459 / 459 |
breast | 100% | 13517.93 | 459 / 459 | 100% | 320.43 | 1117 / 1118 |
kidney | 100% | 12397.19 | 89 / 89 | 100% | 215.63 | 899 / 901 |
thymus | 100% | 15166.94 | 653 / 653 | 100% | 233.18 | 603 / 605 |
intestine | 100% | 11904.22 | 966 / 966 | 100% | 257.21 | 525 / 527 |
bladder | 100% | 13405.05 | 21 / 21 | 100% | 293.53 | 502 / 504 |
esophagus | 100% | 12083.70 | 1445 / 1445 | 99% | 243.59 | 182 / 183 |
adrenal gland | 100% | 19738.75 | 258 / 258 | 99% | 214.09 | 228 / 230 |
brain | 98% | 5463.17 | 2578 / 2642 | 100% | 238.08 | 705 / 705 |
adipose | 100% | 13500.29 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 155.82 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 226.13 | 29 / 29 |
spleen | 100% | 15527.00 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 315.20 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 171.74 | 1 / 1 |
blood vessel | 100% | 13334.96 | 1333 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 9158.49 | 848 / 861 | 0% | 0 | 0 / 0 |
muscle | 98% | 7084.57 | 787 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 95% | 8809.33 | 880 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007029 | Biological process | endoplasmic reticulum organization |
GO_0045047 | Biological process | protein targeting to ER |
GO_0006620 | Biological process | post-translational protein targeting to endoplasmic reticulum membrane |
GO_0006613 | Biological process | cotranslational protein targeting to membrane |
GO_0031204 | Biological process | post-translational protein targeting to membrane, translocation |
GO_0039019 | Biological process | pronephric nephron development |
GO_0006616 | Biological process | SRP-dependent cotranslational protein targeting to membrane, translocation |
GO_0070588 | Biological process | calcium ion transmembrane transport |
GO_0006614 | Biological process | SRP-dependent cotranslational protein targeting to membrane |
GO_0045048 | Biological process | protein insertion into ER membrane |
GO_0005784 | Cellular component | Sec61 translocon complex |
GO_0016020 | Cellular component | membrane |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0043022 | Molecular function | ribosome binding |
GO_0005048 | Molecular function | signal sequence binding |
GO_0008320 | Molecular function | protein transmembrane transporter activity |
GO_0005515 | Molecular function | protein binding |
GO_0005262 | Molecular function | calcium channel activity |
Gene name | SEC61A1 |
Protein name | SEC61 translocon subunit alpha 1 Protein transport protein Sec61 subunit alpha isoform 1 (Sec61 alpha-1) Protein transport protein Sec61 subunit alpha isoform 1 |
Synonyms | hCG_40108 SEC61A |
Description | FUNCTION: Component of SEC61 channel-forming translocon complex that mediates transport of signal peptide-containing precursor polypeptides across the endoplasmic reticulum (ER) . Forms a ribosome receptor and a gated pore in the ER membrane, both functions required for cotranslational translocation of nascent polypeptides . May cooperate with auxiliary protein SEC62, SEC63 and HSPA5/BiP to enable post-translational transport of small presecretory proteins . The SEC61 channel is also involved in ER membrane insertion of transmembrane proteins: it mediates membrane insertion of the first few transmembrane segments of proteins, while insertion of subsequent transmembrane regions of multi-pass membrane proteins is mediated by the multi-pass translocon (MPT) complex . The SEC61 channel cooperates with the translocating protein TRAM1 to import nascent proteins into the ER . Controls the passive efflux of calcium ions from the ER lumen to the cytosol through SEC61 channel, contributing to the maintenance of cellular calcium homeostasis . Plays a critical role in nephrogenesis, specifically at pronephros stage (By similarity). . |
Accessions | A0A8V8TN19 ENST00000699272.1 A0A8V8TPD8 ENST00000481210.6 ENST00000699273.1 B3KNF6 ENST00000424880.2 [P61619-3] ENST00000699275.1 A0A8V8TN25 A0A8V8TMZ3 B4DR61 A0A8V8TMZ5 ENST00000699271.1 ENST00000699267.1 ENST00000699274.1 A0A8V8TNG8 ENST00000464451.5 C9JXC6 P61619 ENST00000699270.1 ENST00000483956.2 ENST00000699269.1 ENST00000243253.8 [P61619-1] |