RBM23 | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
B cell	16 studies	24% ± 10%	Explore
ciliated cell	15 studies	26% ± 10%	Explore
natural killer cell	14 studies	21% ± 6%	Explore
naive B cell	13 studies	21% ± 4%	Explore
endothelial cell	11 studies	23% ± 7%	Explore
CD4-positive, alpha-beta T cell	10 studies	22% ± 7%	Explore
memory B cell	9 studies	21% ± 5%	Explore
CD8-positive, alpha-beta T cell	8 studies	21% ± 5%	Explore
regulatory T cell	8 studies	20% ± 5%	Explore
T cell	8 studies	21% ± 6%	Explore
classical monocyte	7 studies	22% ± 6%	Explore
astrocyte	7 studies	21% ± 5%	Explore
CD16-negative, CD56-bright natural killer cell, human	6 studies	18% ± 2%	Explore
mature NK T cell	6 studies	17% ± 2%	Explore
gamma-delta T cell	6 studies	25% ± 9%	Explore
retinal rod cell	6 studies	22% ± 6%	Explore
fibroblast	6 studies	23% ± 7%	Explore
CD8-positive, alpha-beta memory T cell	6 studies	19% ± 3%	Explore
CD16-positive, CD56-dim natural killer cell, human	5 studies	20% ± 3%	Explore
epithelial cell	5 studies	39% ± 14%	Explore
basal cell	5 studies	24% ± 9%	Explore
type I pneumocyte	5 studies	18% ± 2%	Explore
plasmacytoid dendritic cell	5 studies	21% ± 8%	Explore
leukocyte	4 studies	18% ± 3%	Explore
non-classical monocyte	4 studies	23% ± 9%	Explore
pericyte	4 studies	22% ± 5%	Explore
glutamatergic neuron	4 studies	32% ± 12%	Explore
mast cell	4 studies	19% ± 1%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	3 studies	17% ± 3%	Explore
conventional dendritic cell	3 studies	26% ± 4%	Explore
effector memory CD8-positive, alpha-beta T cell	3 studies	25% ± 10%	Explore
connective tissue cell	3 studies	25% ± 5%	Explore
retinal bipolar neuron	3 studies	26% ± 7%	Explore
precursor B cell	3 studies	26% ± 2%	Explore
monocyte	3 studies	20% ± 5%	Explore
innate lymphoid cell	3 studies	21% ± 5%	Explore
type II pneumocyte	3 studies	17% ± 1%	Explore
GABAergic neuron	3 studies	31% ± 6%	Explore
abnormal cell	3 studies	19% ± 2%	Explore
oligodendrocyte precursor cell	3 studies	25% ± 4%	Explore
enteroendocrine cell	3 studies	28% ± 10%	Explore
T follicular helper cell	3 studies	26% ± 10%	Explore
macrophage	3 studies	21% ± 4%	Explore
transit amplifying cell	3 studies	25% ± 10%	Explore
goblet cell	3 studies	20% ± 1%	Explore
neuron	3 studies	31% ± 12%	Explore
microglial cell	3 studies	18% ± 2%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
peripheral blood	6 studies	25% ± 8%	Explore
eye	6 studies	23% ± 7%	Explore
brain	6 studies	23% ± 8%	Explore
lung	5 studies	23% ± 4%	Explore
intestine	4 studies	21% ± 8%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
bladder	100%	4318.14	21 / 21	100%	15.34	504 / 504
breast	100%	4090.87	459 / 459	100%	20.51	1118 / 1118
esophagus	100%	3926.05	1445 / 1445	100%	15.15	183 / 183
lung	100%	4299.25	578 / 578	100%	16.69	1155 / 1155
ovary	100%	5974.62	180 / 180	100%	18.76	430 / 430
prostate	100%	5079.49	245 / 245	100%	17.16	502 / 502
stomach	100%	3505.30	359 / 359	100%	13.75	286 / 286
thymus	100%	5885.21	653 / 653	100%	21.83	605 / 605
uterus	100%	5784.56	170 / 170	100%	19.01	458 / 459
intestine	100%	4201.12	966 / 966	100%	14.42	525 / 527
skin	100%	3613.04	1809 / 1809	100%	18.59	470 / 472
brain	100%	3128.96	2630 / 2642	100%	21.69	705 / 705
kidney	100%	4300.27	89 / 89	99%	14.34	895 / 901
pancreas	100%	2161.78	327 / 328	99%	15.12	177 / 178
adrenal gland	100%	4179.70	258 / 258	97%	16.98	224 / 230
liver	100%	2569.80	226 / 226	96%	8.51	391 / 406
adipose	100%	3493.51	1204 / 1204	0%	0	0 / 0
blood vessel	100%	3245.84	1335 / 1335	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	18.79	29 / 29
spleen	100%	6113.89	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	19.36	45 / 45
ureter	0%	0	0 / 0	100%	5.25	1 / 1
peripheral blood	99%	5824.88	920 / 929	0%	0	0 / 0
muscle	99%	1701.84	795 / 803	0%	0	0 / 0
heart	99%	2214.81	852 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	99%	17.29	79 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0008380	Biological process	RNA splicing
GO_0045893	Biological process	positive regulation of DNA-templated transcription
GO_0048024	Biological process	regulation of mRNA splicing, via spliceosome
GO_0006397	Biological process	mRNA processing
GO_0016020	Cellular component	membrane
GO_0005634	Cellular component	nucleus
GO_1990446	Molecular function	U1 snRNP binding
GO_0005515	Molecular function	protein binding
GO_0003723	Molecular function	RNA binding

IV. Literature review

[source]

Gene name	RBM23
Protein name	RNA binding motif protein 23 isoform 3 (RNA binding motif protein 23, isoform CRA_c) RNA binding motif protein 23 Probable RNA-binding protein 23 (CAPER beta) (CAPERbeta) (RNA-binding motif protein 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) RNA binding motif protein 23 isoform 2 (RNA binding motif protein 23, isoform CRA_d) RNA binding motif protein 23 isoform 1
Synonyms	hCG_41980 PP239 RNPC4
Description	FUNCTION: RNA-binding protein that acts both as a transcription coactivator and pre-mRNA splicing factor . Regulates steroid hormone receptor-mediated transcription, independently of the pre-mRNA splicing factor activity . .
Accessions	H0YJN4 G3XAP0 A0A0S2Z5J3 A0A0S2Z5I1 ENST00000346528.9 [Q86U06-4] G3V225 G3V3V3 ENST00000557403.5 ENST00000557245.1 ENST00000542016.6 ENST00000554618.5 ENST00000554256.5 G3V546 A0A0S2Z5D9 ENST00000359890.8 [Q86U06-1] ENST00000557227.5 A0A0B4J267 ENST00000557571.5 G3V2B6 G3V2B4 Q86U06 H0YJJ3 G3V5V1 G3V5W6 ENST00000553884.5 G3V5Y2 G3V3S8 G3V5Z6 ENST00000555722.5 ENST00000555676.5 G3V2H9 ENST00000399922.6 [Q86U06-2] ENST00000556862.5 ENST00000555209.5 ENST00000557549.5 G3V5J5 ENST00000555691.1 ENST00000557464.5 ENST00000553876.2

RBM23 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review