FAM13B | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
endothelial cell	18 studies	30% ± 12%	Explore
B cell	17 studies	21% ± 6%	Explore
astrocyte	15 studies	31% ± 15%	Explore
oligodendrocyte	15 studies	44% ± 18%	Explore
microglial cell	12 studies	37% ± 13%	Explore
GABAergic neuron	11 studies	44% ± 22%	Explore
glutamatergic neuron	11 studies	48% ± 24%	Explore
macrophage	11 studies	36% ± 15%	Explore
fibroblast	11 studies	26% ± 8%	Explore
natural killer cell	10 studies	20% ± 4%	Explore
oligodendrocyte precursor cell	10 studies	40% ± 16%	Explore
mast cell	10 studies	24% ± 7%	Explore
T cell	10 studies	22% ± 7%	Explore
naive B cell	9 studies	18% ± 2%	Explore
adipocyte	9 studies	26% ± 6%	Explore
CD16-negative, CD56-bright natural killer cell, human	8 studies	19% ± 4%	Explore
CD8-positive, alpha-beta T cell	8 studies	19% ± 3%	Explore
memory B cell	8 studies	17% ± 2%	Explore
smooth muscle cell	8 studies	27% ± 6%	Explore
neuron	7 studies	37% ± 17%	Explore
myeloid cell	7 studies	31% ± 13%	Explore
endothelial cell of lymphatic vessel	7 studies	28% ± 6%	Explore
interneuron	6 studies	53% ± 23%	Explore
CD16-positive, CD56-dim natural killer cell, human	6 studies	19% ± 4%	Explore
epithelial cell	6 studies	35% ± 19%	Explore
dendritic cell	6 studies	27% ± 4%	Explore
basal cell	6 studies	31% ± 18%	Explore
pericyte	6 studies	29% ± 7%	Explore
cardiac muscle cell	5 studies	47% ± 10%	Explore
ciliated cell	5 studies	23% ± 7%	Explore
monocyte	5 studies	32% ± 8%	Explore
type I pneumocyte	5 studies	27% ± 7%	Explore
type II pneumocyte	5 studies	22% ± 6%	Explore
gamma-delta T cell	5 studies	21% ± 3%	Explore
non-classical monocyte	4 studies	23% ± 8%	Explore
granule cell	4 studies	32% ± 7%	Explore
mucosal invariant T cell	4 studies	19% ± 4%	Explore
CD4-positive, alpha-beta T cell	4 studies	19% ± 2%	Explore
effector memory CD8-positive, alpha-beta T cell	4 studies	19% ± 3%	Explore
lymphocyte	4 studies	35% ± 12%	Explore
retinal rod cell	4 studies	19% ± 2%	Explore
endothelial cell of vascular tree	4 studies	25% ± 12%	Explore
club cell	4 studies	24% ± 10%	Explore
CD8-positive, alpha-beta memory T cell	4 studies	18% ± 2%	Explore
plasmacytoid dendritic cell	4 studies	19% ± 4%	Explore
regulatory T cell	4 studies	17% ± 2%	Explore
GABAergic interneuron	3 studies	40% ± 1%	Explore
precursor B cell	3 studies	21% ± 2%	Explore
plasma cell	3 studies	24% ± 4%	Explore
mesothelial cell	3 studies	28% ± 7%	Explore
GABAergic amacrine cell	3 studies	25% ± 6%	Explore
Mueller cell	3 studies	20% ± 3%	Explore
glycinergic amacrine cell	3 studies	20% ± 2%	Explore
Schwann cell	3 studies	38% ± 9%	Explore
amacrine cell	3 studies	19% ± 3%	Explore
retinal pigment epithelial cell	3 studies	33% ± 23%	Explore
ependymal cell	3 studies	35% ± 12%	Explore
alveolar macrophage	3 studies	35% ± 8%	Explore
goblet cell	3 studies	32% ± 22%	Explore
transit amplifying cell	3 studies	37% ± 27%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	3 studies	19% ± 5%	Explore
mural cell	3 studies	32% ± 14%	Explore
abnormal cell	3 studies	28% ± 15%	Explore
mucus secreting cell	3 studies	22% ± 5%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
brain	17 studies	42% ± 21%	Explore
lung	5 studies	23% ± 6%	Explore
eye	5 studies	27% ± 15%	Explore
heart	4 studies	32% ± 5%	Explore
peripheral blood	3 studies	19% ± 1%	Explore
adipose	3 studies	29% ± 3%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
prostate	100%	3039.84	245 / 245	100%	19.25	502 / 502
brain	99%	2542.03	2623 / 2642	100%	17.66	704 / 705
adrenal gland	100%	4246.45	258 / 258	99%	17.42	228 / 230
breast	100%	2387.84	459 / 459	99%	19.43	1107 / 1118
thymus	100%	2299.45	653 / 653	99%	15.62	599 / 605
esophagus	100%	2707.55	1444 / 1445	99%	11.11	181 / 183
kidney	100%	1653.64	89 / 89	97%	14.30	875 / 901
ovary	100%	3024.87	180 / 180	97%	9.38	416 / 430
uterus	100%	3358.52	170 / 170	97%	12.17	444 / 459
lung	99%	2032.77	574 / 578	97%	10.43	1125 / 1155
bladder	100%	3237.24	21 / 21	96%	10.14	485 / 504
intestine	100%	2709.20	966 / 966	95%	8.27	502 / 527
stomach	99%	1696.34	357 / 359	96%	9.71	274 / 286
skin	100%	1707.29	1801 / 1809	95%	17.60	450 / 472
pancreas	93%	853.19	304 / 328	97%	11.24	172 / 178
liver	88%	645.04	199 / 226	65%	4.26	263 / 406
blood vessel	100%	4437.47	1335 / 1335	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	15.50	29 / 29
spleen	100%	2454.33	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	3.49	1 / 1
adipose	100%	2222.71	1203 / 1204	0%	0	0 / 0
tonsil	0%	0	0 / 0	96%	11.99	43 / 45
eye	0%	0	0 / 0	93%	11.95	74 / 80
heart	92%	1602.20	795 / 861	0%	0	0 / 0
peripheral blood	86%	1492.54	802 / 929	0%	0	0 / 0
muscle	60%	426.51	485 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0007165	Biological process	signal transduction
GO_0051056	Biological process	regulation of small GTPase mediated signal transduction
GO_0005829	Cellular component	cytosol
GO_0005096	Molecular function	GTPase activator activity

IV. Literature review

[source]

Gene name	FAM13B
Protein name	Family with sequence similarity 13 member B Protein FAM13B (GAP-like protein N61) FAM13B
Synonyms	FAM13B1 C5orf5
Description
Accessions	A0A8I5KSB9 Q9NYF5 D6RBJ3 ENST00000689681.1 D6RDL7 ENST00000420893.6 [Q9NYF5-2] D6RE97 D6RCA0 ENST00000514310.5 ENST00000033079.7 [Q9NYF5-1] ENST00000508403.5 ENST00000425075.6 [Q9NYF5-3] ENST00000505961.1 A0A2X0SG06 ENST00000509596.5 D6RAT6 ENST00000502471.5

FAM13B report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review