Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 3727.16 | 459 / 459 | 100% | 52.02 | 1118 / 1118 |
esophagus | 100% | 3893.32 | 1445 / 1445 | 100% | 41.03 | 183 / 183 |
ovary | 100% | 4149.48 | 180 / 180 | 100% | 44.87 | 430 / 430 |
prostate | 100% | 4021.08 | 245 / 245 | 100% | 45.79 | 502 / 502 |
stomach | 100% | 2838.61 | 359 / 359 | 100% | 42.03 | 286 / 286 |
uterus | 100% | 4497.46 | 170 / 170 | 100% | 51.72 | 459 / 459 |
skin | 100% | 4044.17 | 1808 / 1809 | 100% | 48.63 | 472 / 472 |
kidney | 100% | 3403.31 | 89 / 89 | 100% | 32.61 | 900 / 901 |
thymus | 100% | 3752.03 | 653 / 653 | 100% | 43.70 | 604 / 605 |
lung | 100% | 3527.26 | 577 / 578 | 100% | 40.33 | 1155 / 1155 |
intestine | 100% | 3967.55 | 966 / 966 | 100% | 44.48 | 526 / 527 |
bladder | 100% | 4158.10 | 21 / 21 | 100% | 46.53 | 503 / 504 |
liver | 100% | 2137.00 | 226 / 226 | 100% | 24.32 | 405 / 406 |
brain | 100% | 2791.96 | 2635 / 2642 | 100% | 42.49 | 705 / 705 |
pancreas | 100% | 1947.11 | 327 / 328 | 100% | 34.71 | 178 / 178 |
adrenal gland | 100% | 3867.45 | 258 / 258 | 99% | 28.82 | 228 / 230 |
adipose | 100% | 3733.95 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 3949.78 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 35.21 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 57.28 | 29 / 29 |
muscle | 100% | 2791.01 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 3824.03 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 48.26 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 38.36 | 1 / 1 |
heart | 99% | 2781.03 | 854 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 91% | 2762.86 | 846 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0051260 | Biological process | protein homooligomerization |
GO_0016441 | Biological process | post-transcriptional gene silencing |
GO_0061157 | Biological process | mRNA destabilization |
GO_0048255 | Biological process | mRNA stabilization |
GO_2000036 | Biological process | regulation of stem cell population maintenance |
GO_0060965 | Biological process | negative regulation of miRNA-mediated gene silencing |
GO_0006606 | Biological process | protein import into nucleus |
GO_0045727 | Biological process | positive regulation of translation |
GO_0070935 | Biological process | 3'-UTR-mediated mRNA stabilization |
GO_0032930 | Biological process | positive regulation of superoxide anion generation |
GO_0098978 | Cellular component | glutamatergic synapse |
GO_0016528 | Cellular component | sarcoplasm |
GO_0031410 | Cellular component | cytoplasmic vesicle |
GO_0016020 | Cellular component | membrane |
GO_0005654 | Cellular component | nucleoplasm |
GO_0098794 | Cellular component | postsynapse |
GO_0000932 | Cellular component | P-body |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_1990904 | Cellular component | ribonucleoprotein complex |
GO_0010494 | Cellular component | cytoplasmic stress granule |
GO_0005634 | Cellular component | nucleus |
GO_0042803 | Molecular function | protein homodimerization activity |
GO_0019901 | Molecular function | protein kinase binding |
GO_0003729 | Molecular function | mRNA binding |
GO_0106222 | Molecular function | lncRNA binding |
GO_0035925 | Molecular function | mRNA 3'-UTR AU-rich region binding |
GO_0003723 | Molecular function | RNA binding |
GO_0003730 | Molecular function | mRNA 3'-UTR binding |
GO_0035198 | Molecular function | miRNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0003725 | Molecular function | double-stranded RNA binding |
Gene name | ELAVL1 |
Protein name | ELAV-like protein 1 (Hu-antigen R) (HuR) ELAV like RNA binding protein 1 |
Synonyms | HUR |
Description | FUNCTION: RNA-binding protein that binds to the 3'-UTR region of mRNAs and increases their stability . Involved in embryonic stem cell (ESC) differentiation: preferentially binds mRNAs that are not methylated by N6-methyladenosine (m6A), stabilizing them, promoting ESC differentiation (By similarity). Has also been shown to be capable of binding to m6A-containing mRNAs and contributes to MYC stability by binding to m6A-containing MYC mRNAs . Binds to poly-U elements and AU-rich elements (AREs) in the 3'-UTR of target mRNAs . Binds avidly to the AU-rich element in FOS and IL3/interleukin-3 mRNAs. In the case of the FOS AU-rich element, binds to a core element of 27 nucleotides that contain AUUUA, AUUUUA, and AUUUUUA motifs. Binds preferentially to the 5'-UUUU[AG]UUU-3' motif in vitro . With ZNF385A, binds the 3'-UTR of p53/TP53 mRNA to control their nuclear export induced by CDKN2A. Hence, may regulate p53/TP53 expression and mediate in part the CDKN2A anti-proliferative activity. May also bind with ZNF385A the CCNB1 mRNA (By similarity). Increases the stability of the leptin mRNA harboring an AU-rich element (ARE) in its 3' UTR . . |
Accessions | M0QZR9 ENST00000596459.5 [Q15717-1] ENST00000596154.5 M0R055 Q15717 ENST00000593807.1 ENST00000407627.7 [Q15717-1] |