DEGS1 report

Query

Invalid input gene. Please select from the suggestions.

I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
fibroblast	23 studies	26% ± 10%	Explore
smooth muscle cell	19 studies	24% ± 7%	Explore
endothelial cell	18 studies	27% ± 9%	Explore
pericyte	18 studies	26% ± 7%	Explore
macrophage	17 studies	23% ± 7%	Explore
B cell	13 studies	18% ± 5%	Explore
endothelial cell of lymphatic vessel	12 studies	32% ± 12%	Explore
conventional dendritic cell	12 studies	25% ± 12%	Explore
connective tissue cell	11 studies	23% ± 7%	Explore
myofibroblast cell	10 studies	28% ± 9%	Explore
memory B cell	10 studies	18% ± 3%	Explore
naive B cell	9 studies	19% ± 3%	Explore
CD4-positive, alpha-beta T cell	9 studies	20% ± 4%	Explore
CD8-positive, alpha-beta T cell	9 studies	17% ± 3%	Explore
mucosal invariant T cell	9 studies	21% ± 3%	Explore
regulatory T cell	9 studies	17% ± 2%	Explore
CD16-negative, CD56-bright natural killer cell, human	7 studies	18% ± 1%	Explore
basal cell	7 studies	24% ± 8%	Explore
dendritic cell	7 studies	31% ± 19%	Explore
capillary endothelial cell	6 studies	22% ± 6%	Explore
CD8-positive, alpha-beta memory T cell	6 studies	19% ± 2%	Explore
natural killer cell	6 studies	18% ± 2%	Explore
gamma-delta T cell	6 studies	22% ± 6%	Explore
CD4-positive, alpha-beta memory T cell	6 studies	20% ± 2%	Explore
mast cell	5 studies	20% ± 3%	Explore
type I pneumocyte	5 studies	28% ± 8%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	5 studies	17% ± 2%	Explore
effector memory CD8-positive, alpha-beta T cell	5 studies	20% ± 6%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	5 studies	17% ± 1%	Explore
epithelial cell	5 studies	36% ± 17%	Explore
astrocyte	5 studies	20% ± 7%	Explore
endothelial cell of vascular tree	5 studies	19% ± 2%	Explore
classical monocyte	4 studies	23% ± 7%	Explore
myeloid cell	4 studies	27% ± 13%	Explore
effector memory CD4-positive, alpha-beta T cell	4 studies	25% ± 8%	Explore
microglial cell	4 studies	24% ± 5%	Explore
oligodendrocyte precursor cell	4 studies	29% ± 10%	Explore
neuron	4 studies	24% ± 9%	Explore
oligodendrocyte	4 studies	22% ± 7%	Explore
T cell	3 studies	17% ± 1%	Explore
non-classical monocyte	3 studies	27% ± 12%	Explore
vein endothelial cell	3 studies	17% ± 1%	Explore
abnormal cell	3 studies	30% ± 9%	Explore
placental villous trophoblast	3 studies	53% ± 12%	Explore
innate lymphoid cell	3 studies	18% ± 1%	Explore
ciliated cell	3 studies	33% ± 12%	Explore
effector CD4-positive, alpha-beta T cell	3 studies	19% ± 1%	Explore
glutamatergic neuron	3 studies	34% ± 12%	Explore
leukocyte	3 studies	20% ± 2%	Explore
T follicular helper cell	3 studies	22% ± 3%	Explore
group 3 innate lymphoid cell	3 studies	23% ± 5%	Explore
keratinocyte	3 studies	43% ± 19%	Explore
plasmacytoid dendritic cell	3 studies	22% ± 2%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
lung	6 studies	27% ± 6%	Explore
brain	5 studies	29% ± 6%	Explore
peripheral blood	4 studies	21% ± 4%	Explore
placenta	4 studies	28% ± 8%	Explore
kidney	3 studies	16% ± 1%	Explore
uterus	3 studies	28% ± 15%	Explore
lymph node	3 studies	18% ± 3%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
prostate	100%	4363.75	245 / 245	100%	327.68	502 / 502
skin	100%	27741.67	1809 / 1809	100%	152.42	471 / 472
thymus	100%	4040.30	652 / 653	100%	183.66	603 / 605
breast	100%	4572.12	459 / 459	99%	182.44	1112 / 1118
lung	100%	4511.56	576 / 578	99%	107.77	1148 / 1155
uterus	100%	3803.19	170 / 170	98%	105.48	451 / 459
ovary	99%	2548.56	178 / 180	99%	102.01	427 / 430
brain	98%	2652.07	2576 / 2642	100%	136.22	705 / 705
esophagus	100%	4762.78	1440 / 1445	98%	92.74	179 / 183
adrenal gland	99%	2558.02	255 / 258	95%	104.50	219 / 230
stomach	100%	3058.19	358 / 359	93%	64.01	267 / 286
kidney	93%	2435.92	83 / 89	96%	154.68	869 / 901
intestine	97%	3647.51	936 / 966	90%	52.81	476 / 527
bladder	100%	4056.90	21 / 21	84%	70.49	421 / 504
liver	73%	1285.00	166 / 226	84%	50.87	343 / 406
pancreas	60%	808.96	196 / 328	97%	76.21	172 / 178
adipose	100%	4994.57	1204 / 1204	0%	0	0 / 0
spleen	100%	3036.86	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	76.65	1 / 1
blood vessel	100%	5270.80	1333 / 1335	0%	0	0 / 0
tonsil	0%	0	0 / 0	98%	89.86	44 / 45
lymph node	0%	0	0 / 0	97%	80.45	28 / 29
eye	0%	0	0 / 0	95%	66.75	76 / 80
heart	95%	2675.10	814 / 861	0%	0	0 / 0
peripheral blood	90%	2567.40	833 / 929	0%	0	0 / 0
muscle	69%	946.11	556 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0