Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 11 studies | 29% ± 12% | |
classical monocyte | 7 studies | 24% ± 8% | |
naive B cell | 7 studies | 17% ± 2% | |
plasmacytoid dendritic cell | 7 studies | 22% ± 6% | |
epithelial cell | 7 studies | 32% ± 16% | |
basal cell | 6 studies | 23% ± 10% | |
non-classical monocyte | 6 studies | 28% ± 12% | |
endothelial cell | 6 studies | 27% ± 8% | |
fibroblast | 6 studies | 22% ± 6% | |
B cell | 6 studies | 20% ± 8% | |
natural killer cell | 6 studies | 19% ± 3% | |
CD16-positive, CD56-dim natural killer cell, human | 5 studies | 19% ± 4% | |
abnormal cell | 5 studies | 20% ± 1% | |
secretory cell | 4 studies | 18% ± 2% | |
precursor B cell | 4 studies | 22% ± 7% | |
pericyte | 4 studies | 23% ± 5% | |
smooth muscle cell | 4 studies | 20% ± 4% | |
goblet cell | 4 studies | 22% ± 4% | |
gamma-delta T cell | 4 studies | 24% ± 13% | |
ionocyte | 3 studies | 29% ± 5% | |
CD4-positive, alpha-beta T cell | 3 studies | 19% ± 1% | |
conventional dendritic cell | 3 studies | 34% ± 10% | |
hematopoietic precursor cell | 3 studies | 23% ± 5% | |
CD8-positive, alpha-beta T cell | 3 studies | 18% ± 2% | |
myeloid cell | 3 studies | 26% ± 4% | |
capillary endothelial cell | 3 studies | 20% ± 6% | |
endothelial cell of lymphatic vessel | 3 studies | 22% ± 5% | |
macrophage | 3 studies | 25% ± 4% | |
neuron | 3 studies | 42% ± 16% | |
type I pneumocyte | 3 studies | 25% ± 7% | |
enteroendocrine cell | 3 studies | 27% ± 10% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 11963.30 | 1445 / 1445 | 100% | 147.60 | 183 / 183 |
liver | 100% | 7630.03 | 226 / 226 | 100% | 120.81 | 406 / 406 |
ovary | 100% | 12613.43 | 180 / 180 | 100% | 157.06 | 430 / 430 |
skin | 100% | 13169.23 | 1809 / 1809 | 100% | 236.00 | 472 / 472 |
thymus | 100% | 14397.50 | 653 / 653 | 100% | 146.63 | 605 / 605 |
lung | 100% | 12898.69 | 578 / 578 | 100% | 132.67 | 1153 / 1155 |
prostate | 100% | 12942.25 | 245 / 245 | 100% | 138.15 | 501 / 502 |
uterus | 100% | 12791.28 | 170 / 170 | 100% | 144.27 | 458 / 459 |
pancreas | 100% | 6794.38 | 327 / 328 | 100% | 106.01 | 178 / 178 |
stomach | 100% | 9401.75 | 359 / 359 | 100% | 127.89 | 285 / 286 |
intestine | 100% | 12693.07 | 966 / 966 | 100% | 128.55 | 525 / 527 |
adrenal gland | 100% | 14168.40 | 258 / 258 | 100% | 104.22 | 229 / 230 |
breast | 100% | 12475.93 | 459 / 459 | 100% | 132.08 | 1113 / 1118 |
brain | 100% | 8304.85 | 2629 / 2642 | 100% | 131.88 | 705 / 705 |
kidney | 100% | 10699.76 | 89 / 89 | 99% | 102.09 | 896 / 901 |
bladder | 100% | 12438.43 | 21 / 21 | 99% | 131.56 | 500 / 504 |
adipose | 100% | 11915.18 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 250.00 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 132.58 | 29 / 29 |
muscle | 100% | 19564.40 | 803 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 100% | 13153.80 | 929 / 929 | 0% | 0 | 0 / 0 |
spleen | 100% | 15000.54 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 132.42 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 100.19 | 1 / 1 |
blood vessel | 100% | 11180.41 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 11496.11 | 853 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006325 | Biological process | chromatin organization |
GO_0070059 | Biological process | intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress |
GO_0030324 | Biological process | lung development |
GO_0007130 | Biological process | synaptonemal complex assembly |
GO_0007283 | Biological process | spermatogenesis |
GO_0032435 | Biological process | negative regulation of proteasomal ubiquitin-dependent protein catabolic process |
GO_0045995 | Biological process | regulation of embryonic development |
GO_0010498 | Biological process | proteasomal protein catabolic process |
GO_0030101 | Biological process | natural killer cell activation |
GO_0006511 | Biological process | ubiquitin-dependent protein catabolic process |
GO_0036506 | Biological process | maintenance of unfolded protein |
GO_0018393 | Biological process | internal peptidyl-lysine acetylation |
GO_0001822 | Biological process | kidney development |
GO_0042771 | Biological process | intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator |
GO_0006620 | Biological process | post-translational protein targeting to endoplasmic reticulum membrane |
GO_0061857 | Biological process | endoplasmic reticulum stress-induced pre-emptive quality control |
GO_0043066 | Biological process | negative regulation of apoptotic process |
GO_0045861 | Biological process | negative regulation of proteolysis |
GO_0030154 | Biological process | cell differentiation |
GO_0050821 | Biological process | protein stabilization |
GO_0007420 | Biological process | brain development |
GO_0006915 | Biological process | apoptotic process |
GO_1904294 | Biological process | positive regulation of ERAD pathway |
GO_0071816 | Biological process | tail-anchored membrane protein insertion into ER membrane |
GO_0036503 | Biological process | ERAD pathway |
GO_0043161 | Biological process | proteasome-mediated ubiquitin-dependent protein catabolic process |
GO_0031647 | Biological process | regulation of protein stability |
GO_0002429 | Biological process | immune response-activating cell surface receptor signaling pathway |
GO_0016020 | Cellular component | membrane |
GO_0071818 | Cellular component | BAT3 complex |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0005634 | Cellular component | nucleus |
GO_0051787 | Molecular function | misfolded protein binding |
GO_0070628 | Molecular function | proteasome binding |
GO_0060090 | Molecular function | molecular adaptor activity |
GO_0043022 | Molecular function | ribosome binding |
GO_0005102 | Molecular function | signaling receptor binding |
GO_0031625 | Molecular function | ubiquitin protein ligase binding |
GO_0030544 | Molecular function | Hsp70 protein binding |
GO_0031593 | Molecular function | polyubiquitin modification-dependent protein binding |
GO_0005515 | Molecular function | protein binding |
GO_1990381 | Molecular function | ubiquitin-specific protease binding |
Gene name | BAG6 |
Protein name | Large proline-rich protein BAG6 Large proline-rich protein BAG6 (BCL2-associated athanogene 6) (HLA-B-associated transcript 3) BAG cochaperone 6 BAG cochaperone 6 (Large proline-rich protein BAG6) Large proline-rich protein BAG6 (BAG family molecular chaperone regulator 6) (BCL2-associated athanogene 6) (BAG-6) (HLA-B-associated transcript 3) (Protein G3) (Protein Scythe) |
Synonyms | hCG_2005629 G3 BAT3 |
Description | FUNCTION: ATP-independent molecular chaperone preventing the aggregation of misfolded and hydrophobic patches-containing proteins . Functions as part of a cytosolic protein quality control complex, the BAG6/BAT3 complex, which maintains these client proteins in a soluble state and participates in their proper delivery to the endoplasmic reticulum or alternatively can promote their sorting to the proteasome where they undergo degradation . The BAG6/BAT3 complex is involved in the post-translational delivery of tail-anchored/type II transmembrane proteins to the endoplasmic reticulum membrane. Recruited to ribosomes, it interacts with the transmembrane region of newly synthesized tail-anchored proteins and together with SGTA and ASNA1 mediates their delivery to the endoplasmic reticulum . Client proteins that cannot be properly delivered to the endoplasmic reticulum are ubiquitinated by RNF126, an E3 ubiquitin-protein ligase associated with BAG6 and are sorted to the proteasome . SGTA which prevents the recruitment of RNF126 to BAG6 may negatively regulate the ubiquitination and the proteasomal degradation of client proteins . Similarly, the BAG6/BAT3 complex also functions as a sorting platform for proteins of the secretory pathway that are mislocalized to the cytosol either delivering them to the proteasome for degradation or to the endoplasmic reticulum . The BAG6/BAT3 complex also plays a role in the endoplasmic reticulum-associated degradation (ERAD), a quality control mechanism that eliminates unwanted proteins of the endoplasmic reticulum through their retrotranslocation to the cytosol and their targeting to the proteasome. It maintains these retrotranslocated proteins in an unfolded yet soluble state condition in the cytosol to ensure their proper delivery to the proteasome . BAG6 is also required for selective ubiquitin-mediated degradation of defective nascent chain polypeptides by the proteasome. In this context, it may participate in the production of antigenic peptides and play a role in antigen presentation in immune response (By similarity). BAG6 is also involved in endoplasmic reticulum stress-induced pre-emptive quality control, a mechanism that selectively attenuates the translocation of newly synthesized proteins into the endoplasmic reticulum and reroutes them to the cytosol for proteasomal degradation. BAG6 may ensure the proper degradation of these proteins and thereby protects the endoplasmic reticulum from protein overload upon stress . By inhibiting the polyubiquitination and subsequent proteasomal degradation of HSPA2 it may also play a role in the assembly of the synaptonemal complex during spermatogenesis (By similarity). Also positively regulates apoptosis by interacting with and stabilizing the proapoptotic factor AIFM1 (By similarity). By controlling the steady-state expression of the IGF1R receptor, indirectly regulates the insulin-like growth factor receptor signaling pathway . .; FUNCTION: Involved in DNA damage-induced apoptosis: following DNA damage, accumulates in the nucleus and forms a complex with p300/EP300, enhancing p300/EP300-mediated p53/TP53 acetylation leading to increase p53/TP53 transcriptional activity . When nuclear, may also act as a component of some chromatin regulator complex that regulates histone 3 'Lys-4' dimethylation (H3K4me2) . .; FUNCTION: Released extracellularly via exosomes, it is a ligand of the natural killer/NK cells receptor NCR3 and stimulates NK cells cytotoxicity. It may thereby trigger NK cells cytotoxicity against neighboring tumor cells and immature myeloid dendritic cells (DC). .; FUNCTION: Mediates ricin-induced apoptosis. . FUNCTION: Released extracellularly via exosomes, it is a ligand of the natural killer/NK cells receptor NCR3 and stimulates NK cells cytotoxicity. It may thereby trigger NK cells cytotoxicity against neighboring tumor cells and immature myeloid dendritic cells (DC). . FUNCTION: Released extracellularly via exosomes, it is a ligand of the natural killer/NK cells receptor NCR3 and stimulates NK cells cytotoxicity. It may thereby trigger NK cells cytotoxicity against neighboring tumor cells and immature myeloid dendritic cells (DC). . FUNCTION: Released extracellularly via exosomes, it is a ligand of the natural killer/NK cells receptor NCR3 and stimulates NK cells cytotoxicity. It may thereby trigger NK cells cytotoxicity against neighboring tumor cells and immature myeloid dendritic cells (DC). . FUNCTION: Released extracellularly via exosomes, it is a ligand of the natural killer/NK cells receptor NCR3 and stimulates NK cells cytotoxicity. It may thereby trigger NK cells cytotoxicity against neighboring tumor cells and immature myeloid dendritic cells (DC). . FUNCTION: Released extracellularly via exosomes, it is a ligand of the natural killer/NK cells receptor NCR3 and stimulates NK cells cytotoxicity. It may thereby trigger NK cells cytotoxicity against neighboring tumor cells and immature myeloid dendritic cells (DC). . FUNCTION: Released extracellularly via exosomes, it is a ligand of the natural killer/NK cells receptor NCR3 and stimulates NK cells cytotoxicity. It may thereby trigger NK cells cytotoxicity against neighboring tumor cells and immature myeloid dendritic cells (DC). . FUNCTION: Released extracellularly via exosomes, it is a ligand of the natural killer/NK cells receptor NCR3 and stimulates NK cells cytotoxicity. It may thereby trigger NK cells cytotoxicity against neighboring tumor cells and immature myeloid dendritic cells (DC). . FUNCTION: Released extracellularly via exosomes, it is a ligand of the natural killer/NK cells receptor NCR3 and stimulates NK cells cytotoxicity. It may thereby trigger NK cells cytotoxicity against neighboring tumor cells and immature myeloid dendritic cells (DC). . |
Accessions | ENST00000615224.2 [P46379-4] ENST00000415721.5 A0A7I2V3H1 ENST00000447798.5 ENST00000419847.5 [P46379-2] ENST00000676571.1 ENST00000425568.5 ENST00000445869.5 H0Y4L1 ENST00000449450.6 [P46379-1] ENST00000375964.11 ENST00000438112.5 ENST00000453241.5 ENST00000442479.6 [P46379-2] ENST00000429830.5 ENST00000613474.4 [P46379-4] ENST00000425649.6 ENST00000422860.5 ENST00000439917.5 A0A0G2JL47 ENST00000450513.5 ENST00000419496.5 ENST00000456804.5 A0A7I2V508 ENST00000453772.5 ENST00000436859.5 ENST00000442698.5 ENST00000438842.5 A0A0G2JJ92 ENST00000416755.5 ENST00000453928.5 ENST00000428037.5 ENST00000434880.5 ENST00000446325.5 ENST00000429956.5 ENST00000443312.5 ENST00000455101.5 ENST00000454165.1 ENST00000417144.5 [P46379-2] ENST00000438641.5 ENST00000424480.5 ENST00000449874.5 ENST00000551350.5 [P46379-5] ENST00000615725.4 [P46379-4] ENST00000422756.6 ENST00000432174.5 ENST00000420075.5 ENST00000421354.5 ENST00000457868.5 ENST00000453833.5 ENST00000444402.6 ENST00000447656.5 ENST00000415034.5 ENST00000454248.5 ENST00000456828.5 ENST00000424003.5 ENST00000437959.5 ENST00000552467.2 ENST00000437731.5 ENST00000431345.5 ENST00000417419.5 ENST00000433726.5 ENST00000431516.5 ENST00000439612.5 ENST00000433146.5 ENST00000617635.2 [P46379-4] ENST00000453036.5 ENST00000416852.5 ENST00000436497.5 F6TC96 ENST00000434444.5 ENST00000413922.6 F6X9W3 ENST00000432674.5 ENST00000452994.5 ENST00000456067.5 ENST00000433960.5 ENST00000431049.5 ENST00000432814.5 ENST00000425373.5 ENST00000679119.1 ENST00000436807.5 ENST00000456622.5 ENST00000383448.6 [P46379-2] ENST00000426331.5 ENST00000417468.5 X6REW1 F6XTU0 H0Y7K4 ENST00000434446.5 ENST00000458287.5 ENST00000615143.1 [P46379-4] ENST00000432539.5 F6VEM6 H0Y710 ENST00000419409.5 A0A0G2JIB3 ENST00000442112.5 H0Y759 ENST00000428905.5 ENST00000417824.5 ENST00000420098.5 ENST00000621056.2 [P46379-4] ENST00000431989.5 ENST00000458596.5 ENST00000362049.10 [P46379-5] ENST00000552605.4 [P46379-5] ENST00000418840.5 ENST00000451534.5 ENST00000451932.6 [P46379-1] ENST00000436814.5 ENST00000415373.6 ENST00000424176.5 P46379 ENST00000361076.9 [P46379-1] ENST00000441994.5 ENST00000438546.5 ENST00000421106.5 ENST00000676615.2 [P46379-3] ENST00000419635.5 ENST00000436434.5 ENST00000420942.5 ENST00000428271.5 ENST00000412012.5 ENST00000423612.5 ENST00000433828.5 A0A1B0GX79 ENST00000437735.5 A0A7P0MQS5 A0A024RCM4 ENST00000435066.5 ENST00000442870.5 ENST00000413373.5 ENST00000546462.4 ENST00000457802.5 ENST00000424504.5 ENST00000451042.5 ENST00000411914.5 A0A0G2JK23 ENST00000383446.8 [P46379-2] ENST00000449173.5 ENST00000456223.5 ENST00000456286.5 ENST00000430999.5 ENST00000211379.9 [P46379-2] ENST00000414208.5 ENST00000412992.5 ENST00000421991.5 ENST00000416797.5 ENST00000455409.5 ENST00000453763.5 ENST00000435080.5 F6U1F2 ENST00000435543.5 ENST00000454478.6 ENST00000441898.5 ENST00000443182.6 [P46379-2] ENST00000452627.5 ENST00000434874.5 ENST00000415770.5 ENST00000444557.5 F6S6P2 ENST00000448278.5 ENST00000438149.5 ENST00000440499.5 F6U341 ENST00000451898.5 ENST00000427244.5 ENST00000436569.5 ENST00000427281.5 ENST00000442427.5 ENST00000451948.5 ENST00000445519.5 ENST00000375976.8 [P46379-2] ENST00000437054.5 ENST00000455689.5 ENST00000437771.5 A0A0G2JIA9 ENST00000415345.5 ENST00000428326.5 ENST00000552116.2 [P46379-5] ENST00000422948.5 ENST00000439687.6 [P46379-4] ENST00000441054.5 A0A0G2JJM1 ENST00000446133.5 ENST00000423989.5 A0A0G2JJR8 ENST00000416094.5 ENST00000424221.5 ENST00000415170.5 F6WML8 F6UR09 ENST00000550393.4 ENST00000438330.5 |