Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 38 studies | 43% ± 19% | |
macrophage | 22 studies | 37% ± 22% | |
astrocyte | 18 studies | 45% ± 21% | |
fibroblast | 14 studies | 39% ± 14% | |
microglial cell | 13 studies | 55% ± 16% | |
smooth muscle cell | 11 studies | 30% ± 12% | |
pericyte | 11 studies | 30% ± 11% | |
mast cell | 11 studies | 40% ± 14% | |
endothelial cell of lymphatic vessel | 10 studies | 33% ± 13% | |
oligodendrocyte precursor cell | 10 studies | 30% ± 15% | |
myeloid cell | 10 studies | 39% ± 18% | |
oligodendrocyte | 10 studies | 29% ± 12% | |
adipocyte | 9 studies | 44% ± 16% | |
mesothelial cell | 9 studies | 46% ± 15% | |
capillary endothelial cell | 8 studies | 33% ± 10% | |
retinal rod cell | 8 studies | 45% ± 27% | |
epithelial cell | 8 studies | 44% ± 22% | |
basal cell | 8 studies | 37% ± 22% | |
endothelial cell of artery | 8 studies | 30% ± 14% | |
ciliated cell | 8 studies | 33% ± 15% | |
glutamatergic neuron | 7 studies | 40% ± 23% | |
retinal cone cell | 7 studies | 71% ± 22% | |
dendritic cell | 7 studies | 45% ± 12% | |
vein endothelial cell | 7 studies | 37% ± 21% | |
GABAergic neuron | 6 studies | 35% ± 16% | |
retinal ganglion cell | 6 studies | 32% ± 18% | |
naive B cell | 6 studies | 19% ± 1% | |
B cell | 6 studies | 33% ± 10% | |
neuron | 5 studies | 37% ± 22% | |
plasma cell | 5 studies | 44% ± 18% | |
amacrine cell | 5 studies | 34% ± 20% | |
cardiac muscle cell | 5 studies | 46% ± 11% | |
T cell | 5 studies | 35% ± 6% | |
monocyte | 5 studies | 46% ± 5% | |
goblet cell | 5 studies | 36% ± 30% | |
club cell | 5 studies | 35% ± 11% | |
type I pneumocyte | 5 studies | 43% ± 8% | |
type II pneumocyte | 5 studies | 41% ± 8% | |
squamous epithelial cell | 4 studies | 31% ± 20% | |
pro-B cell | 4 studies | 28% ± 3% | |
retinal pigment epithelial cell | 4 studies | 64% ± 23% | |
CD4-positive, alpha-beta T cell | 4 studies | 31% ± 9% | |
lymphocyte | 4 studies | 32% ± 14% | |
Mueller cell | 4 studies | 41% ± 21% | |
OFF-bipolar cell | 4 studies | 36% ± 18% | |
endothelial cell of vascular tree | 4 studies | 52% ± 15% | |
hepatocyte | 4 studies | 61% ± 23% | |
natural killer cell | 4 studies | 26% ± 4% | |
leukocyte | 4 studies | 51% ± 9% | |
plasmacytoid dendritic cell | 4 studies | 20% ± 5% | |
renal principal cell | 4 studies | 51% ± 22% | |
regulatory T cell | 4 studies | 31% ± 12% | |
endothelial cell of sinusoid | 3 studies | 36% ± 9% | |
hepatic stellate cell | 3 studies | 41% ± 16% | |
conventional dendritic cell | 3 studies | 18% ± 3% | |
glomerular endothelial cell | 3 studies | 35% ± 4% | |
granule cell | 3 studies | 24% ± 7% | |
CD8-positive, alpha-beta T cell | 3 studies | 21% ± 5% | |
mucosal invariant T cell | 3 studies | 28% ± 11% | |
retinal bipolar neuron | 3 studies | 30% ± 9% | |
GABAergic amacrine cell | 3 studies | 38% ± 9% | |
glycinergic amacrine cell | 3 studies | 36% ± 7% | |
retina horizontal cell | 3 studies | 27% ± 14% | |
rod bipolar cell | 3 studies | 49% ± 18% | |
myofibroblast cell | 3 studies | 31% ± 9% | |
abnormal cell | 3 studies | 30% ± 20% | |
ependymal cell | 3 studies | 44% ± 23% | |
alveolar macrophage | 3 studies | 55% ± 7% | |
erythrocyte | 3 studies | 50% ± 13% | |
respiratory goblet cell | 3 studies | 50% ± 13% | |
muscle cell | 3 studies | 39% ± 9% | |
brush cell | 3 studies | 18% ± 2% | |
interneuron | 3 studies | 37% ± 19% | |
mural cell | 3 studies | 47% ± 4% | |
mucus secreting cell | 3 studies | 43% ± 11% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 7112.11 | 245 / 245 | 100% | 41.59 | 500 / 502 |
esophagus | 100% | 8446.18 | 1445 / 1445 | 99% | 29.68 | 182 / 183 |
kidney | 100% | 10030.96 | 89 / 89 | 99% | 54.24 | 892 / 901 |
thymus | 100% | 21220.42 | 653 / 653 | 99% | 88.32 | 598 / 605 |
pancreas | 99% | 5311.13 | 326 / 328 | 98% | 27.12 | 174 / 178 |
lung | 100% | 9772.28 | 578 / 578 | 97% | 24.26 | 1116 / 1155 |
breast | 100% | 11028.64 | 459 / 459 | 96% | 32.67 | 1078 / 1118 |
stomach | 100% | 6041.14 | 359 / 359 | 95% | 23.79 | 273 / 286 |
intestine | 100% | 10428.45 | 966 / 966 | 95% | 21.04 | 502 / 527 |
bladder | 100% | 8553.95 | 21 / 21 | 95% | 20.12 | 478 / 504 |
adrenal gland | 100% | 7690.59 | 258 / 258 | 93% | 16.67 | 213 / 230 |
uterus | 100% | 11944.32 | 170 / 170 | 92% | 21.29 | 424 / 459 |
skin | 100% | 8691.53 | 1808 / 1809 | 91% | 17.73 | 430 / 472 |
ovary | 100% | 11530.37 | 180 / 180 | 83% | 14.08 | 355 / 430 |
liver | 98% | 3537.19 | 221 / 226 | 67% | 11.47 | 273 / 406 |
brain | 57% | 1422.13 | 1514 / 2642 | 92% | 15.96 | 650 / 705 |
adipose | 100% | 13238.94 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 9862.43 | 1335 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 15187.29 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 6651.18 | 241 / 241 | 0% | 0 | 0 / 0 |
heart | 97% | 5917.13 | 836 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 96% | 23.22 | 43 / 45 |
peripheral blood | 76% | 5660.53 | 710 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 52% | 9.52 | 15 / 29 |
eye | 0% | 0 | 0 / 0 | 49% | 5.62 | 39 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0010468 | Biological process | regulation of gene expression |
GO_0032783 | Cellular component | super elongation complex |
GO_0008023 | Cellular component | transcription elongation factor complex |
GO_0005515 | Molecular function | protein binding |
Gene name | AFF1 |
Protein name | AF4/FMR2 family member 1 AFF1 protein ALF transcription elongation factor 1 AF4/FMR2 family, member 1 AF4/FMR2 family member 1 (ALL1-fused gene from chromosome 4 protein) (Protein AF-4) (Protein FEL) (Proto-oncogene AF4) |
Synonyms | FEL MLLT2 PBM1 AF4 hCG_1816301 |
Description | |
Accessions | ENST00000507468.5 ENST00000544085.6 [P51825-3] D6RIZ5 ENST00000511442.1 H0Y9S4 ENST00000395146.9 [P51825-2] ENST00000511722.5 ENST00000514970.2 Q05D98 F5GXF9 Q14C88 ENST00000307808.10 [P51825-1] ENST00000674009.1 A0A669KBI3 ENST00000544085 P51825 E7ETI4 E7EMC5 ENST00000503477.5 D6RAU0 |