Name | Number of supported studies | Average coverage | |
---|---|---|---|
B cell | 29 studies | 31% ± 14% | |
ciliated cell | 19 studies | 39% ± 18% | |
naive B cell | 14 studies | 27% ± 8% | |
glutamatergic neuron | 12 studies | 63% ± 24% | |
endothelial cell | 12 studies | 28% ± 17% | |
astrocyte | 11 studies | 31% ± 12% | |
microglial cell | 11 studies | 35% ± 13% | |
GABAergic neuron | 10 studies | 52% ± 26% | |
memory B cell | 9 studies | 21% ± 6% | |
oligodendrocyte precursor cell | 9 studies | 32% ± 8% | |
epithelial cell | 8 studies | 37% ± 16% | |
neuron | 7 studies | 43% ± 15% | |
retinal ganglion cell | 7 studies | 60% ± 20% | |
plasma cell | 7 studies | 30% ± 10% | |
plasmacytoid dendritic cell | 7 studies | 26% ± 10% | |
interneuron | 6 studies | 58% ± 18% | |
retinal cone cell | 6 studies | 28% ± 6% | |
basal cell | 6 studies | 27% ± 7% | |
type II pneumocyte | 6 studies | 33% ± 11% | |
immature B cell | 5 studies | 34% ± 13% | |
amacrine cell | 5 studies | 28% ± 4% | |
retinal rod cell | 5 studies | 30% ± 7% | |
adipocyte | 5 studies | 20% ± 3% | |
cardiac muscle cell | 5 studies | 34% ± 9% | |
type I pneumocyte | 5 studies | 28% ± 6% | |
deuterosomal cell | 4 studies | 34% ± 8% | |
granule cell | 4 studies | 39% ± 8% | |
Mueller cell | 4 studies | 21% ± 4% | |
respiratory goblet cell | 4 studies | 26% ± 10% | |
club cell | 4 studies | 27% ± 9% | |
goblet cell | 4 studies | 29% ± 21% | |
oligodendrocyte | 4 studies | 29% ± 14% | |
GABAergic interneuron | 3 studies | 52% ± 6% | |
precursor B cell | 3 studies | 37% ± 9% | |
squamous epithelial cell | 3 studies | 38% ± 17% | |
pro-B cell | 3 studies | 31% ± 9% | |
lymphocyte | 3 studies | 23% ± 2% | |
GABAergic amacrine cell | 3 studies | 33% ± 7% | |
OFF-bipolar cell | 3 studies | 36% ± 22% | |
ON-bipolar cell | 3 studies | 39% ± 22% | |
glycinergic amacrine cell | 3 studies | 32% ± 2% | |
rod bipolar cell | 3 studies | 26% ± 9% | |
germinal center B cell | 3 studies | 22% ± 1% | |
hepatocyte | 3 studies | 35% ± 14% | |
retinal pigment epithelial cell | 3 studies | 27% ± 8% | |
ependymal cell | 3 studies | 57% ± 11% | |
T cell | 3 studies | 21% ± 6% | |
endothelial cell of lymphatic vessel | 3 studies | 18% ± 1% | |
transit amplifying cell | 3 studies | 31% ± 13% | |
abnormal cell | 3 studies | 29% ± 16% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
stomach | 100% | 1094.53 | 359 / 359 | 100% | 19.58 | 286 / 286 |
intestine | 100% | 1728.21 | 966 / 966 | 100% | 21.99 | 526 / 527 |
thymus | 100% | 2193.31 | 653 / 653 | 100% | 22.37 | 602 / 605 |
prostate | 100% | 1091.25 | 244 / 245 | 99% | 18.96 | 499 / 502 |
ovary | 99% | 553.13 | 178 / 180 | 100% | 16.23 | 429 / 430 |
brain | 99% | 1479.15 | 2620 / 2642 | 99% | 12.54 | 697 / 705 |
pancreas | 100% | 1049.73 | 327 / 328 | 98% | 10.54 | 174 / 178 |
breast | 97% | 972.49 | 447 / 459 | 100% | 31.86 | 1116 / 1118 |
esophagus | 99% | 1443.44 | 1427 / 1445 | 98% | 18.18 | 180 / 183 |
lung | 97% | 845.60 | 558 / 578 | 100% | 17.64 | 1151 / 1155 |
uterus | 98% | 693.31 | 166 / 170 | 97% | 15.85 | 447 / 459 |
bladder | 95% | 797.14 | 20 / 21 | 94% | 14.75 | 476 / 504 |
kidney | 100% | 1128.67 | 89 / 89 | 85% | 8.16 | 769 / 901 |
adrenal gland | 95% | 710.62 | 244 / 258 | 82% | 7.14 | 188 / 230 |
liver | 98% | 568.19 | 221 / 226 | 75% | 6.24 | 305 / 406 |
skin | 90% | 684.01 | 1628 / 1809 | 80% | 8.13 | 379 / 472 |
lymph node | 0% | 0 | 0 / 0 | 100% | 26.50 | 29 / 29 |
spleen | 100% | 1521.43 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 6.23 | 1 / 1 |
adipose | 96% | 506.91 | 1157 / 1204 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 96% | 16.67 | 43 / 45 |
muscle | 90% | 584.63 | 722 / 803 | 0% | 0 | 0 / 0 |
heart | 85% | 658.29 | 731 / 861 | 0% | 0 | 0 / 0 |
blood vessel | 84% | 372.10 | 1122 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 71% | 6.14 | 57 / 80 |
peripheral blood | 50% | 1668.53 | 469 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0048870 | Biological process | cell motility |
GO_0007638 | Biological process | mechanosensory behavior |
GO_0007286 | Biological process | spermatid development |
GO_0002177 | Cellular component | manchette |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0003727 | Molecular function | single-stranded RNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0008017 | Molecular function | microtubule binding |
GO_0003725 | Molecular function | double-stranded RNA binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | STRBP |
Protein name | Spermatid perinuclear RNA-binding protein Spermatid perinuclear RNA binding protein |
Synonyms | DKFZp434G151 SPNR HEL162 DKFZp434P151 hCG_31045 |
Description | FUNCTION: Involved in spermatogenesis and sperm function. Plays a role in regulation of cell growth. Binds to double-stranded DNA and RNA. Binds most efficiently to poly(I:C) RNA than to poly(dI:dC) DNA. Binds also to single-stranded poly(G) RNA. Binds non-specifically to the mRNA PRM1 3'-UTR and adenovirus VA RNA (By similarity). . |
Accessions | ENST00000447404.6 [Q96SI9-1] H0YC91 Q5JPA5 ENST00000496533.5 Q96SI9 A0A0S2Z5K8 H0YD00 ENST00000348403.10 [Q96SI9-1] E9PKQ0 ENST00000478973.6 V9HWK4 ENST00000360998.3 [Q96SI9-2] ENST00000471564.6 ENST00000407982.6 H0YD70 ENST00000479114.2 |