SPOCK2 report

Query

Invalid input gene. Please select from the suggestions.

I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
T cell	35 studies	37% ± 12%	Explore
CD4-positive, alpha-beta T cell	34 studies	43% ± 14%	Explore
CD8-positive, alpha-beta T cell	32 studies	36% ± 15%	Explore
natural killer cell	30 studies	24% ± 7%	Explore
regulatory T cell	28 studies	56% ± 16%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	18 studies	42% ± 13%	Explore
mucosal invariant T cell	17 studies	58% ± 20%	Explore
mature NK T cell	16 studies	36% ± 16%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	15 studies	45% ± 13%	Explore
gamma-delta T cell	14 studies	44% ± 16%	Explore
effector memory CD8-positive, alpha-beta T cell	13 studies	40% ± 19%	Explore
CD4-positive, alpha-beta memory T cell	13 studies	52% ± 15%	Explore
CD8-positive, alpha-beta memory T cell	13 studies	46% ± 16%	Explore
endothelial cell	13 studies	34% ± 13%	Explore
astrocyte	11 studies	29% ± 10%	Explore
CD16-negative, CD56-bright natural killer cell, human	11 studies	26% ± 8%	Explore
type I pneumocyte	10 studies	48% ± 20%	Explore
T follicular helper cell	10 studies	54% ± 18%	Explore
CD16-positive, CD56-dim natural killer cell, human	10 studies	30% ± 12%	Explore
glutamatergic neuron	9 studies	33% ± 17%	Explore
GABAergic neuron	8 studies	42% ± 19%	Explore
innate lymphoid cell	7 studies	32% ± 11%	Explore
naive B cell	7 studies	22% ± 4%	Explore
memory B cell	7 studies	22% ± 8%	Explore
B cell	6 studies	20% ± 4%	Explore
CD4-positive helper T cell	6 studies	45% ± 16%	Explore
effector CD4-positive, alpha-beta T cell	6 studies	48% ± 11%	Explore
mesothelial cell	6 studies	40% ± 12%	Explore
effector memory CD4-positive, alpha-beta T cell	6 studies	57% ± 13%	Explore
central memory CD8-positive, alpha-beta T cell	5 studies	41% ± 18%	Explore
exhausted T cell	5 studies	40% ± 12%	Explore
effector CD8-positive, alpha-beta T cell	5 studies	32% ± 9%	Explore
T-helper 17 cell	5 studies	53% ± 20%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	5 studies	28% ± 10%	Explore
leukocyte	4 studies	30% ± 9%	Explore
podocyte	4 studies	57% ± 23%	Explore
retinal ganglion cell	4 studies	85% ± 16%	Explore
group 3 innate lymphoid cell	4 studies	61% ± 10%	Explore
oligodendrocyte precursor cell	4 studies	24% ± 9%	Explore
interneuron	4 studies	47% ± 20%	Explore
T-helper 1 cell	4 studies	55% ± 4%	Explore
neuron	3 studies	31% ± 10%	Explore
amacrine cell	3 studies	27% ± 5%	Explore
retinal bipolar neuron	3 studies	26% ± 3%	Explore
lymphocyte	3 studies	29% ± 9%	Explore
OFF-bipolar cell	3 studies	43% ± 25%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	48% ± 5%	Explore
double-positive, alpha-beta thymocyte	3 studies	49% ± 16%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
peripheral blood	15 studies	28% ± 6%	Explore
brain	14 studies	23% ± 11%	Explore
lung	3 studies	20% ± 4%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	100%	30804.92	2641 / 2642	99%	254.97	700 / 705
kidney	99%	13870.31	88 / 89	67%	50.19	604 / 901
adrenal gland	84%	6295.17	218 / 258	75%	264.30	173 / 230
lung	97%	15558.45	562 / 578	53%	31.26	617 / 1155
thymus	52%	2145.14	342 / 653	85%	213.21	513 / 605
ovary	20%	897.31	36 / 180	88%	161.70	377 / 430
spleen	96%	6239.84	232 / 241	0%	0	0 / 0
lymph node	0%	0	0 / 0	86%	88.97	25 / 29
tonsil	0%	0	0 / 0	67%	49.02	30 / 45
peripheral blood	66%	6801.23	612 / 929	0%	0	0 / 0
intestine	37%	2372.37	355 / 966	20%	9.28	104 / 527
pancreas	0%	0	0 / 328	47%	30.55	84 / 178
stomach	8%	231.01	28 / 359	31%	16.38	90 / 286
uterus	5%	144.46	8 / 170	31%	18.77	141 / 459
prostate	11%	367.75	28 / 245	20%	18.05	102 / 502
breast	4%	112.12	17 / 459	28%	12.78	313 / 1118
skin	0%	3.72	2 / 1809	31%	16.56	146 / 472
esophagus	2%	83.92	34 / 1445	27%	13.61	49 / 183
bladder	5%	122.33	1 / 21	18%	7.96	89 / 504
adipose	18%	640.05	214 / 1204	0%	0	0 / 0
liver	0%	0	0 / 226	8%	3.32	32 / 406
heart	8%	222.47	66 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	5%	2.80	4 / 80
blood vessel	1%	61.17	15 / 1335	0%	0	0 / 0
muscle	1%	27.65	6 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1