Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| prostate | 100% | 9989.63 | 245 / 245 | 100% | 127.99 | 501 / 502 |
| brain | 100% | 8840.77 | 2634 / 2642 | 100% | 206.41 | 705 / 705 |
| thymus | 100% | 13776.35 | 653 / 653 | 100% | 178.21 | 603 / 605 |
| breast | 100% | 14234.40 | 459 / 459 | 99% | 215.48 | 1112 / 1118 |
| esophagus | 100% | 10260.54 | 1444 / 1445 | 99% | 117.92 | 182 / 183 |
| intestine | 100% | 9640.49 | 966 / 966 | 99% | 99.95 | 521 / 527 |
| kidney | 100% | 13288.28 | 89 / 89 | 99% | 145.15 | 889 / 901 |
| uterus | 99% | 8160.74 | 169 / 170 | 99% | 166.84 | 455 / 459 |
| lung | 100% | 17503.59 | 578 / 578 | 99% | 123.31 | 1138 / 1155 |
| stomach | 100% | 12488.10 | 359 / 359 | 98% | 106.61 | 280 / 286 |
| bladder | 100% | 9875.86 | 21 / 21 | 98% | 167.82 | 493 / 504 |
| ovary | 95% | 5842.68 | 171 / 180 | 100% | 277.91 | 430 / 430 |
| skin | 99% | 11432.56 | 1782 / 1809 | 92% | 86.02 | 436 / 472 |
| pancreas | 91% | 4131.46 | 298 / 328 | 98% | 148.87 | 174 / 178 |
| adrenal gland | 99% | 6311.03 | 255 / 258 | 88% | 68.85 | 202 / 230 |
| adipose | 100% | 13057.35 | 1204 / 1204 | 0% | 0 | 0 / 0 |
| blood vessel | 100% | 18036.19 | 1335 / 1335 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 100% | 104.53 | 29 / 29 |
| spleen | 100% | 25124.80 | 241 / 241 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 100% | 151.16 | 45 / 45 |
| ureter | 0% | 0 | 0 / 0 | 100% | 431.18 | 1 / 1 |
| muscle | 100% | 11869.08 | 802 / 803 | 0% | 0 | 0 / 0 |
| peripheral blood | 99% | 19110.28 | 923 / 929 | 0% | 0 | 0 / 0 |
| heart | 98% | 7573.52 | 848 / 861 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 76% | 59.31 | 61 / 80 |
| liver | 6% | 200.67 | 14 / 226 | 29% | 28.43 | 116 / 406 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0006656 | Biological process | phosphatidylcholine biosynthetic process |
| GO_0015871 | Biological process | choline transport |
| GO_0043123 | Biological process | positive regulation of canonical NF-kappaB signal transduction |
| GO_0055085 | Biological process | transmembrane transport |
| GO_0034229 | Biological process | ethanolamine transport |
| GO_0005741 | Cellular component | mitochondrial outer membrane |
| GO_0070062 | Cellular component | extracellular exosome |
| GO_0005765 | Cellular component | lysosomal membrane |
| GO_0035579 | Cellular component | specific granule membrane |
| GO_0005886 | Cellular component | plasma membrane |
| GO_0016020 | Cellular component | membrane |
| GO_0005739 | Cellular component | mitochondrion |
| GO_0034228 | Molecular function | ethanolamine transmembrane transporter activity |
| GO_0015297 | Molecular function | antiporter activity |
| GO_0015220 | Molecular function | choline transmembrane transporter activity |
| GO_0022857 | Molecular function | transmembrane transporter activity |
| Gene name | SLC44A2 |
| Protein name | Choline transporter-like protein Choline transporter-like protein 2 (Solute carrier family 44 member 2) Solute carrier family 44 member 2 |
| Synonyms | hCG_28494 PSEC0210 CTL2 |
| Description | FUNCTION: [Isoform 1]: Choline/H+ antiporter, mainly in mitochodria . Also acts as a low-affinity ethanolamine/H+ antiporter, regulating the supply of extracellular ethanolamine (Etn) for the CDP-Etn pathway, redistribute intracellular Etn and balance the CDP-Cho and CDP-Etn arms of the Kennedy pathway . .; FUNCTION: [Isoform 3]: Does not exhibit choline transporter activity. . FUNCTION: Choline transporter. . FUNCTION: Choline transporter. . FUNCTION: Choline transporter. . FUNCTION: Choline transporter. . FUNCTION: Choline transporter. . |
| Accessions | K7EMR2 ENST00000335757.10 [Q8IWA5-1] K7ESP7 K7ER17 ENST00000588688.5 Q8IWA5 A0A0S2YRM7 ENST00000590857.5 K7EPV6 ENST00000591194.5 ENST00000407327.8 [Q8IWA5-3] ENST00000586078.5 [Q8IWA5-2] ENST00000590382.5 K7EMN3 ENST00000586549.1 A0A024R798 ENST00000592293.5 A0A140TA83 A0A088QCU6 ENST00000588409.1 A0A088QF11 K7ESF5 |