SDC4 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
epithelial cell	21 studies	37% ± 18%	Explore
basal cell	20 studies	37% ± 19%	Explore
ciliated cell	19 studies	43% ± 18%	Explore
type I pneumocyte	12 studies	47% ± 21%	Explore
type II pneumocyte	12 studies	59% ± 23%	Explore
club cell	11 studies	35% ± 19%	Explore
astrocyte	11 studies	42% ± 15%	Explore
secretory cell	10 studies	45% ± 10%	Explore
respiratory goblet cell	7 studies	34% ± 17%	Explore
smooth muscle cell	6 studies	19% ± 4%	Explore
ionocyte	6 studies	35% ± 12%	Explore
fibroblast	6 studies	20% ± 3%	Explore
goblet cell	6 studies	25% ± 6%	Explore
kidney loop of Henle epithelial cell	5 studies	40% ± 18%	Explore
hepatocyte	5 studies	44% ± 24%	Explore
squamous epithelial cell	4 studies	43% ± 21%	Explore
epithelial cell of proximal tubule	4 studies	21% ± 4%	Explore
abnormal cell	4 studies	27% ± 8%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	52% ± 8%	Explore
duct epithelial cell	3 studies	33% ± 7%	Explore
hillock cell	3 studies	27% ± 3%	Explore
kidney distal convoluted tubule epithelial cell	3 studies	59% ± 6%	Explore
renal alpha-intercalated cell	3 studies	48% ± 8%	Explore
renal principal cell	3 studies	51% ± 6%	Explore
extravillous trophoblast	3 studies	42% ± 1%	Explore
mesothelial cell	3 studies	33% ± 11%	Explore
cholangiocyte	3 studies	42% ± 22%	Explore
luminal cell of prostate epithelium	3 studies	37% ± 5%	Explore
pancreatic ductal cell	3 studies	62% ± 6%	Explore
intestinal crypt stem cell	3 studies	19% ± 3%	Explore
mucus secreting cell	3 studies	35% ± 23%	Explore
endothelial cell	3 studies	27% ± 5%	Explore
transit amplifying cell	3 studies	24% ± 6%	Explore
keratinocyte	3 studies	41% ± 15%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
lung	12 studies	29% ± 15%	Explore
kidney	3 studies	29% ± 5%	Explore
breast	3 studies	26% ± 12%	Explore
liver	3 studies	22% ± 5%	Explore
prostate	3 studies	30% ± 9%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
kidney	100%	18255.01	89 / 89	99%	568.66	895 / 901
stomach	100%	11481.82	358 / 359	98%	415.37	281 / 286
bladder	100%	10077.76	21 / 21	97%	513.08	491 / 504
lung	99%	17056.50	573 / 578	98%	520.60	1135 / 1155
esophagus	100%	9241.27	1440 / 1445	97%	373.61	178 / 183
liver	100%	19855.16	226 / 226	97%	436.83	392 / 406
intestine	99%	10081.80	952 / 966	97%	394.43	513 / 527
pancreas	97%	6098.23	319 / 328	96%	584.56	170 / 178
thymus	99%	7033.48	647 / 653	91%	1134.84	553 / 605
breast	91%	10851.91	417 / 459	99%	481.45	1104 / 1118
uterus	98%	5729.17	167 / 170	91%	496.72	419 / 459
prostate	100%	7141.33	245 / 245	80%	160.34	402 / 502
ovary	64%	2783.58	115 / 180	95%	272.91	407 / 430
skin	100%	19116.06	1809 / 1809	51%	91.76	242 / 472
adrenal gland	100%	8045.42	258 / 258	37%	69.25	84 / 230
brain	75%	5105.31	1990 / 2642	38%	86.29	268 / 705
tonsil	0%	0	0 / 0	100%	507.89	45 / 45
ureter	0%	0	0 / 0	100%	790.90	1 / 1
blood vessel	100%	11337.85	1331 / 1335	0%	0	0 / 0
muscle	97%	7482.10	780 / 803	0%	0	0 / 0
adipose	93%	6418.45	1118 / 1204	0%	0	0 / 0
heart	91%	5367.35	783 / 861	0%	0	0 / 0
spleen	76%	3897.89	184 / 241	0%	0	0 / 0
lymph node	0%	0	0 / 0	38%	71.54	11 / 29
eye	0%	0	0 / 0	5%	6.54	4 / 80
peripheral blood	3%	97.78	28 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0