Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 11 studies | 49% ± 23% | |
club cell | 10 studies | 66% ± 30% | |
basal cell | 9 studies | 47% ± 24% | |
fibroblast | 8 studies | 23% ± 15% | |
secretory cell | 8 studies | 64% ± 27% | |
type I pneumocyte | 7 studies | 36% ± 15% | |
type II pneumocyte | 7 studies | 48% ± 19% | |
endothelial cell of lymphatic vessel | 6 studies | 32% ± 15% | |
respiratory goblet cell | 6 studies | 64% ± 23% | |
mast cell | 5 studies | 24% ± 4% | |
duct epithelial cell | 5 studies | 72% ± 26% | |
ionocyte | 5 studies | 60% ± 25% | |
mucus secreting cell | 5 studies | 55% ± 26% | |
B cell | 4 studies | 23% ± 6% | |
natural killer cell | 4 studies | 30% ± 7% | |
smooth muscle cell | 4 studies | 20% ± 4% | |
epithelial cell | 4 studies | 53% ± 17% | |
vein endothelial cell | 4 studies | 28% ± 12% | |
plasma cell | 3 studies | 23% ± 5% | |
endothelial cell | 3 studies | 32% ± 17% | |
deuterosomal cell | 3 studies | 50% ± 14% | |
CD8-positive, alpha-beta T cell | 3 studies | 31% ± 9% | |
capillary endothelial cell | 3 studies | 40% ± 9% | |
conventional dendritic cell | 3 studies | 20% ± 3% | |
endothelial cell of artery | 3 studies | 34% ± 14% | |
non-classical monocyte | 3 studies | 19% ± 6% | |
pericyte | 3 studies | 28% ± 7% | |
macrophage | 3 studies | 29% ± 14% | |
luminal hormone-sensing cell of mammary gland | 3 studies | 26% ± 9% | |
progenitor cell of mammary luminal epithelium | 3 studies | 26% ± 10% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 12 studies | 35% ± 19% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 9090.80 | 577 / 578 | 66% | 851.93 | 767 / 1155 |
prostate | 95% | 624.72 | 233 / 245 | 32% | 15.60 | 161 / 502 |
thymus | 87% | 63.01 | 571 / 653 | 36% | 17.47 | 219 / 605 |
breast | 85% | 711.77 | 392 / 459 | 31% | 47.29 | 352 / 1118 |
spleen | 100% | 173.44 | 241 / 241 | 0% | 0 | 0 / 0 |
pancreas | 58% | 175.66 | 190 / 328 | 37% | 64.45 | 66 / 178 |
ovary | 27% | 25.82 | 49 / 180 | 40% | 28.04 | 172 / 430 |
uterus | 36% | 207.62 | 62 / 170 | 21% | 59.78 | 96 / 459 |
liver | 53% | 56.01 | 120 / 226 | 2% | 0.43 | 10 / 406 |
skin | 48% | 53.34 | 866 / 1809 | 3% | 2.73 | 14 / 472 |
kidney | 44% | 19.54 | 39 / 89 | 6% | 1.18 | 53 / 901 |
adrenal gland | 41% | 22.40 | 105 / 258 | 7% | 1.15 | 16 / 230 |
adipose | 47% | 21.25 | 563 / 1204 | 0% | 0 | 0 / 0 |
brain | 39% | 25.39 | 1022 / 2642 | 0% | 0.05 | 3 / 705 |
esophagus | 19% | 482.02 | 278 / 1445 | 18% | 18.32 | 33 / 183 |
stomach | 25% | 24.84 | 91 / 359 | 8% | 25.83 | 23 / 286 |
peripheral blood | 24% | 61.20 | 223 / 929 | 0% | 0 | 0 / 0 |
bladder | 5% | 182.86 | 1 / 21 | 13% | 42.50 | 64 / 504 |
intestine | 10% | 6.27 | 99 / 966 | 6% | 8.73 | 33 / 527 |
lymph node | 0% | 0 | 0 / 0 | 7% | 0.87 | 2 / 29 |
tonsil | 0% | 0 | 0 / 0 | 7% | 0.89 | 3 / 45 |
blood vessel | 5% | 3.38 | 73 / 1335 | 0% | 0 | 0 / 0 |
heart | 4% | 2.43 | 33 / 861 | 0% | 0 | 0 / 0 |
muscle | 2% | 1.39 | 13 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 1% | 0.14 | 1 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007165 | Biological process | signal transduction |
GO_0042127 | Biological process | regulation of cell population proliferation |
GO_1901741 | Biological process | positive regulation of myoblast fusion |
GO_0030308 | Biological process | negative regulation of cell growth |
GO_0005615 | Cellular component | extracellular space |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005515 | Molecular function | protein binding |
GO_0005125 | Molecular function | cytokine activity |
Gene name | SCGB3A1 |
Protein name | Secretoglobin family 3A member 1 (Cytokine HIN-1) (High in normal 1) (Pneumo secretory protein 2) (PnSP-2) (Uteroglobin-related protein 2) |
Synonyms | UGRP2 HIN1 PNSP2 UNQ629/PRO1245 |
Description | FUNCTION: Secreted cytokine-like protein. Inhibits cell growth in vitro. . |
Accessions | ENST00000292641.4 Q96QR1 |