SAMSN1 report

Query

Invalid input gene. Please select from the suggestions.

I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
macrophage	41 studies	37% ± 16%	Explore
mast cell	31 studies	63% ± 19%	Explore
CD8-positive, alpha-beta T cell	26 studies	28% ± 10%	Explore
T cell	25 studies	31% ± 14%	Explore
natural killer cell	25 studies	26% ± 9%	Explore
classical monocyte	25 studies	44% ± 18%	Explore
CD4-positive, alpha-beta T cell	25 studies	33% ± 13%	Explore
non-classical monocyte	24 studies	46% ± 20%	Explore
monocyte	23 studies	40% ± 19%	Explore
regulatory T cell	21 studies	37% ± 14%	Explore
dendritic cell	18 studies	47% ± 13%	Explore
myeloid cell	17 studies	37% ± 15%	Explore
microglial cell	16 studies	48% ± 16%	Explore
B cell	15 studies	25% ± 8%	Explore
conventional dendritic cell	14 studies	28% ± 10%	Explore
neutrophil	12 studies	51% ± 14%	Explore
CD8-positive, alpha-beta memory T cell	11 studies	33% ± 16%	Explore
leukocyte	10 studies	46% ± 12%	Explore
mature NK T cell	10 studies	35% ± 15%	Explore
memory B cell	9 studies	28% ± 8%	Explore
CD4-positive, alpha-beta memory T cell	9 studies	30% ± 9%	Explore
gamma-delta T cell	8 studies	40% ± 15%	Explore
mononuclear phagocyte	7 studies	43% ± 16%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	6 studies	33% ± 12%	Explore
mucosal invariant T cell	6 studies	24% ± 6%	Explore
innate lymphoid cell	6 studies	36% ± 16%	Explore
alveolar macrophage	6 studies	32% ± 9%	Explore
effector memory CD8-positive, alpha-beta T cell	6 studies	40% ± 11%	Explore
retinal bipolar neuron	5 studies	40% ± 22%	Explore
CD16-negative, CD56-bright natural killer cell, human	5 studies	19% ± 2%	Explore
CD4-positive helper T cell	5 studies	47% ± 17%	Explore
effector memory CD4-positive, alpha-beta T cell	5 studies	37% ± 20%	Explore
effector CD4-positive, alpha-beta T cell	4 studies	34% ± 13%	Explore
effector CD8-positive, alpha-beta T cell	4 studies	29% ± 10%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	4 studies	33% ± 13%	Explore
CD16-positive, CD56-dim natural killer cell, human	4 studies	19% ± 3%	Explore
lymphocyte	4 studies	37% ± 17%	Explore
intermediate monocyte	4 studies	52% ± 19%	Explore
monocyte-derived dendritic cell	4 studies	63% ± 20%	Explore
T-helper 17 cell	4 studies	41% ± 21%	Explore
hematopoietic precursor cell	3 studies	40% ± 33%	Explore
megakaryocyte	3 studies	22% ± 2%	Explore
plasma cell	3 studies	23% ± 5%	Explore
tissue-resident macrophage	3 studies	51% ± 9%	Explore
OFF-bipolar cell	3 studies	55% ± 23%	Explore
ON-bipolar cell	3 studies	77% ± 27%	Explore
rod bipolar cell	3 studies	55% ± 22%	Explore
exhausted T cell	3 studies	24% ± 6%	Explore
inflammatory macrophage	3 studies	36% ± 16%	Explore
granulocyte	3 studies	89% ± 9%	Explore
megakaryocyte-erythroid progenitor cell	3 studies	41% ± 26%	Explore
T follicular helper cell	3 studies	43% ± 11%	Explore
CD4-positive, alpha-beta cytotoxic T cell	3 studies	23% ± 7%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
lung	10 studies	25% ± 9%	Explore
peripheral blood	6 studies	28% ± 11%	Explore
brain	4 studies	24% ± 7%	Explore
intestine	3 studies	27% ± 5%	Explore
lymph node	3 studies	23% ± 6%	Explore
liver	3 studies	29% ± 10%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
lung	100%	2300.84	578 / 578	92%	9.31	1060 / 1155
breast	85%	368.20	388 / 459	89%	6.43	993 / 1118
stomach	79%	344.67	283 / 359	74%	6.37	211 / 286
intestine	81%	591.51	785 / 966	67%	4.49	351 / 527
bladder	81%	404.24	17 / 21	62%	4.85	312 / 504
esophagus	56%	204.20	806 / 1445	80%	5.22	146 / 183
uterus	49%	163.49	84 / 170	73%	4.69	337 / 459
brain	30%	123.74	804 / 2642	89%	9.65	626 / 705
kidney	45%	195.61	40 / 89	74%	5.69	669 / 901
adrenal gland	76%	289.47	195 / 258	34%	1.86	79 / 230
prostate	69%	291.84	168 / 245	41%	1.62	205 / 502
lymph node	0%	0	0 / 0	100%	38.52	29 / 29
peripheral blood	100%	7952.73	929 / 929	0%	0	0 / 0
spleen	100%	2822.76	241 / 241	0%	0	0 / 0
pancreas	15%	42.32	50 / 328	83%	6.95	148 / 178
adipose	98%	989.88	1175 / 1204	0%	0	0 / 0
thymus	48%	181.26	311 / 653	45%	2.76	274 / 605
ovary	25%	73.84	45 / 180	66%	3.25	283 / 430
tonsil	0%	0	0 / 0	87%	7.36	39 / 45
skin	18%	51.36	330 / 1809	60%	5.20	281 / 472
liver	38%	142.73	85 / 226	31%	1.56	127 / 406
blood vessel	62%	360.69	826 / 1335	0%	0	0 / 0
heart	39%	170.45	333 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	13%	0.51	10 / 80
muscle	2%	4.72	18 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1