Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 19 studies | 71% ± 18% | |
oligodendrocyte | 15 studies | 40% ± 15% | |
oligodendrocyte precursor cell | 15 studies | 75% ± 16% | |
endothelial cell | 15 studies | 44% ± 18% | |
microglial cell | 15 studies | 60% ± 14% | |
macrophage | 14 studies | 34% ± 18% | |
mast cell | 14 studies | 52% ± 26% | |
fibroblast | 12 studies | 39% ± 13% | |
GABAergic neuron | 11 studies | 61% ± 23% | |
glutamatergic neuron | 11 studies | 51% ± 19% | |
pericyte | 10 studies | 33% ± 14% | |
T cell | 9 studies | 26% ± 9% | |
neuron | 8 studies | 37% ± 18% | |
smooth muscle cell | 8 studies | 37% ± 16% | |
CD4-positive, alpha-beta T cell | 7 studies | 28% ± 9% | |
myeloid cell | 7 studies | 40% ± 18% | |
epithelial cell | 6 studies | 33% ± 14% | |
interneuron | 6 studies | 57% ± 27% | |
dendritic cell | 6 studies | 26% ± 6% | |
monocyte | 6 studies | 31% ± 8% | |
naive thymus-derived CD4-positive, alpha-beta T cell | 5 studies | 34% ± 16% | |
retinal bipolar neuron | 5 studies | 47% ± 20% | |
glial cell | 5 studies | 37% ± 13% | |
adipocyte | 5 studies | 30% ± 9% | |
mesothelial cell | 5 studies | 34% ± 15% | |
goblet cell | 5 studies | 37% ± 25% | |
basal cell | 5 studies | 33% ± 13% | |
endothelial cell of lymphatic vessel | 5 studies | 32% ± 19% | |
natural killer cell | 5 studies | 20% ± 4% | |
type II pneumocyte | 5 studies | 41% ± 6% | |
cholangiocyte | 4 studies | 57% ± 22% | |
cardiac muscle cell | 4 studies | 22% ± 5% | |
lymphocyte | 4 studies | 37% ± 14% | |
Mueller cell | 4 studies | 49% ± 7% | |
retinal rod cell | 4 studies | 45% ± 10% | |
endothelial cell of sinusoid | 3 studies | 39% ± 12% | |
effector memory CD8-positive, alpha-beta T cell | 3 studies | 27% ± 8% | |
differentiation-committed oligodendrocyte precursor | 3 studies | 68% ± 9% | |
GABAergic interneuron | 3 studies | 55% ± 13% | |
granule cell | 3 studies | 55% ± 16% | |
mononuclear phagocyte | 3 studies | 27% ± 8% | |
GABAergic amacrine cell | 3 studies | 21% ± 3% | |
ON-bipolar cell | 3 studies | 29% ± 10% | |
rod bipolar cell | 3 studies | 93% ± 8% | |
hepatocyte | 3 studies | 72% ± 23% | |
abnormal cell | 3 studies | 39% ± 26% | |
ependymal cell | 3 studies | 68% ± 7% | |
brush cell | 3 studies | 34% ± 13% | |
alveolar macrophage | 3 studies | 24% ± 4% | |
ciliated cell | 3 studies | 26% ± 6% | |
gamma-delta T cell | 3 studies | 22% ± 4% | |
Schwann cell | 3 studies | 66% ± 21% | |
club cell | 3 studies | 19% ± 2% | |
mucus secreting cell | 3 studies | 35% ± 13% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 99% | 7917.41 | 2628 / 2642 | 100% | 72.56 | 703 / 705 |
intestine | 100% | 5849.32 | 966 / 966 | 95% | 15.09 | 501 / 527 |
stomach | 94% | 3161.60 | 336 / 359 | 98% | 19.09 | 280 / 286 |
kidney | 100% | 3485.65 | 89 / 89 | 90% | 15.23 | 815 / 901 |
adrenal gland | 100% | 9091.64 | 258 / 258 | 83% | 15.27 | 192 / 230 |
prostate | 99% | 4331.98 | 243 / 245 | 84% | 10.05 | 421 / 502 |
liver | 94% | 1629.24 | 212 / 226 | 88% | 11.92 | 358 / 406 |
bladder | 100% | 3947.43 | 21 / 21 | 75% | 9.03 | 377 / 504 |
lung | 96% | 2102.27 | 557 / 578 | 77% | 10.97 | 894 / 1155 |
ovary | 100% | 4073.53 | 180 / 180 | 68% | 7.19 | 293 / 430 |
pancreas | 71% | 1085.67 | 233 / 328 | 96% | 16.11 | 171 / 178 |
uterus | 99% | 4402.32 | 168 / 170 | 63% | 7.08 | 289 / 459 |
esophagus | 71% | 2496.25 | 1032 / 1445 | 90% | 18.36 | 165 / 183 |
skin | 74% | 2951.42 | 1333 / 1809 | 82% | 15.67 | 386 / 472 |
thymus | 71% | 1045.36 | 464 / 653 | 34% | 2.67 | 206 / 605 |
ureter | 0% | 0 | 0 / 0 | 100% | 5.01 | 1 / 1 |
spleen | 99% | 2017.03 | 239 / 241 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 91% | 21.72 | 73 / 80 |
breast | 60% | 814.97 | 275 / 459 | 22% | 2.00 | 241 / 1118 |
adipose | 77% | 1124.84 | 924 / 1204 | 0% | 0 | 0 / 0 |
muscle | 72% | 1279.97 | 580 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 70% | 1289.25 | 933 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 41% | 3.65 | 12 / 29 |
tonsil | 0% | 0 | 0 / 0 | 38% | 3.15 | 17 / 45 |
heart | 37% | 483.67 | 315 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 14% | 176.79 | 126 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0018105 | Biological process | peptidyl-serine phosphorylation |
GO_0001525 | Biological process | angiogenesis |
GO_0097190 | Biological process | apoptotic signaling pathway |
GO_0110063 | Biological process | positive regulation of angiotensin-activated signaling pathway |
GO_0045651 | Biological process | positive regulation of macrophage differentiation |
GO_0043488 | Biological process | regulation of mRNA stability |
GO_0043536 | Biological process | positive regulation of blood vessel endothelial cell migration |
GO_0045766 | Biological process | positive regulation of angiogenesis |
GO_0010613 | Biological process | positive regulation of cardiac muscle hypertrophy |
GO_2000707 | Biological process | positive regulation of dense core granule biogenesis |
GO_0031666 | Biological process | positive regulation of lipopolysaccharide-mediated signaling pathway |
GO_0010595 | Biological process | positive regulation of endothelial cell migration |
GO_0018107 | Biological process | peptidyl-threonine phosphorylation |
GO_0007077 | Biological process | mitotic nuclear membrane disassembly |
GO_0007155 | Biological process | cell adhesion |
GO_0045785 | Biological process | positive regulation of cell adhesion |
GO_0070555 | Biological process | response to interleukin-1 |
GO_0043687 | Biological process | post-translational protein modification |
GO_0006338 | Biological process | chromatin remodeling |
GO_0090330 | Biological process | regulation of platelet aggregation |
GO_0045931 | Biological process | positive regulation of mitotic cell cycle |
GO_0035556 | Biological process | intracellular signal transduction |
GO_0001938 | Biological process | positive regulation of endothelial cell proliferation |
GO_0030335 | Biological process | positive regulation of cell migration |
GO_0002159 | Biological process | desmosome assembly |
GO_0034351 | Biological process | negative regulation of glial cell apoptotic process |
GO_0006468 | Biological process | protein phosphorylation |
GO_0070374 | Biological process | positive regulation of ERK1 and ERK2 cascade |
GO_0045780 | Biological process | positive regulation of bone resorption |
GO_0106071 | Biological process | positive regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway |
GO_0005886 | Cellular component | plasma membrane |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0005739 | Cellular component | mitochondrion |
GO_0031966 | Cellular component | mitochondrial membrane |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0035866 | Cellular component | alphav-beta3 integrin-PKCalpha complex |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0036064 | Cellular component | ciliary basal body |
GO_0019899 | Molecular function | enzyme binding |
GO_0035403 | Molecular function | histone H3T6 kinase activity |
GO_0106310 | Molecular function | protein serine kinase activity |
GO_0004674 | Molecular function | protein serine/threonine kinase activity |
GO_0004672 | Molecular function | protein kinase activity |
GO_0005178 | Molecular function | integrin binding |
GO_0004698 | Molecular function | calcium,diacylglycerol-dependent serine/threonine kinase activity |
GO_0008270 | Molecular function | zinc ion binding |
GO_0005524 | Molecular function | ATP binding |
GO_0004697 | Molecular function | diacylglycerol-dependent serine/threonine kinase activity |
GO_0005515 | Molecular function | protein binding |
Gene name | PRKCA |
Protein name | PRKCA protein Protein kinase C, alpha Protein kinase C alpha Protein kinase C (EC 2.7.11.13) Protein kinase C alpha type (PKC-A) (PKC-alpha) (EC 2.7.11.13) |
Synonyms | PRKACA PKCA |
Description | FUNCTION: Calcium-activated, phospholipid- and diacylglycerol (DAG)-dependent serine/threonine-protein kinase that is involved in positive and negative regulation of cell proliferation, apoptosis, differentiation, migration and adhesion, tumorigenesis, cardiac hypertrophy, angiogenesis, platelet function and inflammation, by directly phosphorylating targets such as RAF1, BCL2, CSPG4, TNNT2/CTNT, or activating signaling cascade involving MAPK1/3 (ERK1/2) and RAP1GAP. Involved in cell proliferation and cell growth arrest by positive and negative regulation of the cell cycle. Can promote cell growth by phosphorylating and activating RAF1, which mediates the activation of the MAPK/ERK signaling cascade, and/or by up-regulating CDKN1A, which facilitates active cyclin-dependent kinase (CDK) complex formation in glioma cells. In intestinal cells stimulated by the phorbol ester PMA, can trigger a cell cycle arrest program which is associated with the accumulation of the hyper-phosphorylated growth-suppressive form of RB1 and induction of the CDK inhibitors CDKN1A and CDKN1B. Exhibits anti-apoptotic function in glioma cells and protects them from apoptosis by suppressing the p53/TP53-mediated activation of IGFBP3, and in leukemia cells mediates anti-apoptotic action by phosphorylating BCL2. During macrophage differentiation induced by macrophage colony-stimulating factor (CSF1), is translocated to the nucleus and is associated with macrophage development. After wounding, translocates from focal contacts to lamellipodia and participates in the modulation of desmosomal adhesion. Plays a role in cell motility by phosphorylating CSPG4, which induces association of CSPG4 with extensive lamellipodia at the cell periphery and polarization of the cell accompanied by increases in cell motility. During chemokine-induced CD4(+) T cell migration, phosphorylates CDC42-guanine exchange factor DOCK8 resulting in its dissociation from LRCH1 and the activation of GTPase CDC42 . Is highly expressed in a number of cancer cells where it can act as a tumor promoter and is implicated in malignant phenotypes of several tumors such as gliomas and breast cancers. Negatively regulates myocardial contractility and positively regulates angiogenesis, platelet aggregation and thrombus formation in arteries. Mediates hypertrophic growth of neonatal cardiomyocytes, in part through a MAPK1/3 (ERK1/2)-dependent signaling pathway, and upon PMA treatment, is required to induce cardiomyocyte hypertrophy up to heart failure and death, by increasing protein synthesis, protein-DNA ratio and cell surface area. Regulates cardiomyocyte function by phosphorylating cardiac troponin T (TNNT2/CTNT), which induces significant reduction in actomyosin ATPase activity, myofilament calcium sensitivity and myocardial contractility. In angiogenesis, is required for full endothelial cell migration, adhesion to vitronectin (VTN), and vascular endothelial growth factor A (VEGFA)-dependent regulation of kinase activation and vascular tube formation. Involved in the stabilization of VEGFA mRNA at post-transcriptional level and mediates VEGFA-induced cell proliferation. In the regulation of calcium-induced platelet aggregation, mediates signals from the CD36/GP4 receptor for granule release, and activates the integrin heterodimer ITGA2B-ITGB3 through the RAP1GAP pathway for adhesion. During response to lipopolysaccharides (LPS), may regulate selective LPS-induced macrophage functions involved in host defense and inflammation. But in some inflammatory responses, may negatively regulate NF-kappa-B-induced genes, through IL1A-dependent induction of NF-kappa-B inhibitor alpha (NFKBIA/IKBA). Upon stimulation with 12-O-tetradecanoylphorbol-13-acetate (TPA), phosphorylates EIF4G1, which modulates EIF4G1 binding to MKNK1 and may be involved in the regulation of EIF4E phosphorylation. Phosphorylates KIT, leading to inhibition of KIT activity. Phosphorylates ATF2 which promotes cooperation between ATF2 and JUN, activating transcription. Phosphorylates SOCS2 at 'Ser-52' facilitating its ubiquitination and proteasomal degradation (By similarity). Phosphorylates KLHL3 in response to angiotensin II signaling, decreasing the interaction between KLHL3 and WNK4 . . |
Accessions | Q7Z727 L7RSM7 ENST00000578063.5 P17252 ENST00000413366.8 J3KRN5 J3KN97 B0LPH5 ENST00000284384.6 A0A169TED2 |