Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 21 studies | 33% ± 15% | |
astrocyte | 16 studies | 40% ± 18% | |
microglial cell | 14 studies | 39% ± 14% | |
mast cell | 13 studies | 33% ± 11% | |
glutamatergic neuron | 13 studies | 51% ± 27% | |
oligodendrocyte precursor cell | 13 studies | 42% ± 17% | |
oligodendrocyte | 13 studies | 36% ± 14% | |
GABAergic neuron | 11 studies | 48% ± 26% | |
macrophage | 9 studies | 36% ± 15% | |
adipocyte | 9 studies | 32% ± 10% | |
fibroblast | 9 studies | 34% ± 13% | |
epithelial cell | 7 studies | 32% ± 15% | |
interneuron | 7 studies | 54% ± 25% | |
pericyte | 7 studies | 34% ± 15% | |
neuron | 6 studies | 47% ± 21% | |
smooth muscle cell | 6 studies | 30% ± 5% | |
cardiac muscle cell | 5 studies | 36% ± 11% | |
ciliated cell | 5 studies | 29% ± 10% | |
endothelial cell of lymphatic vessel | 5 studies | 39% ± 11% | |
type I pneumocyte | 5 studies | 31% ± 10% | |
type II pneumocyte | 5 studies | 26% ± 8% | |
granule cell | 4 studies | 38% ± 13% | |
dendritic cell | 4 studies | 19% ± 2% | |
mesothelial cell | 4 studies | 32% ± 9% | |
amacrine cell | 4 studies | 35% ± 18% | |
retina horizontal cell | 4 studies | 35% ± 18% | |
retinal cone cell | 4 studies | 34% ± 16% | |
retinal rod cell | 4 studies | 35% ± 11% | |
T cell | 4 studies | 22% ± 5% | |
myeloid cell | 4 studies | 26% ± 5% | |
club cell | 4 studies | 30% ± 11% | |
monocyte | 4 studies | 25% ± 5% | |
basal cell | 4 studies | 32% ± 21% | |
GABAergic interneuron | 3 studies | 51% ± 3% | |
progenitor cell | 3 studies | 32% ± 3% | |
plasma cell | 3 studies | 37% ± 6% | |
CD4-positive, alpha-beta T cell | 3 studies | 19% ± 1% | |
GABAergic amacrine cell | 3 studies | 39% ± 18% | |
Mueller cell | 3 studies | 37% ± 14% | |
glycinergic amacrine cell | 3 studies | 33% ± 11% | |
retinal ganglion cell | 3 studies | 51% ± 26% | |
hepatocyte | 3 studies | 41% ± 17% | |
neural progenitor cell | 3 studies | 36% ± 8% | |
connective tissue cell | 3 studies | 23% ± 3% | |
ependymal cell | 3 studies | 51% ± 11% | |
megakaryocyte-erythroid progenitor cell | 3 studies | 31% ± 12% | |
B cell | 3 studies | 25% ± 7% | |
alveolar macrophage | 3 studies | 33% ± 9% | |
capillary endothelial cell | 3 studies | 24% ± 3% | |
natural killer cell | 3 studies | 21% ± 2% | |
respiratory goblet cell | 3 studies | 33% ± 12% | |
lymphocyte | 3 studies | 34% ± 11% | |
goblet cell | 3 studies | 44% ± 31% | |
transit amplifying cell | 3 studies | 35% ± 26% | |
mucus secreting cell | 3 studies | 30% ± 12% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2451.83 | 1445 / 1445 | 100% | 20.23 | 183 / 183 |
pancreas | 100% | 2234.22 | 328 / 328 | 100% | 17.69 | 178 / 178 |
prostate | 100% | 2229.66 | 245 / 245 | 100% | 20.13 | 502 / 502 |
stomach | 100% | 2453.59 | 359 / 359 | 100% | 17.51 | 286 / 286 |
brain | 100% | 2364.23 | 2638 / 2642 | 100% | 23.82 | 705 / 705 |
lung | 100% | 2388.32 | 578 / 578 | 100% | 19.79 | 1152 / 1155 |
breast | 100% | 2387.85 | 459 / 459 | 100% | 27.02 | 1115 / 1118 |
thymus | 100% | 2532.94 | 653 / 653 | 100% | 27.40 | 603 / 605 |
uterus | 100% | 3003.91 | 170 / 170 | 99% | 18.56 | 456 / 459 |
intestine | 100% | 2729.20 | 966 / 966 | 99% | 18.62 | 523 / 527 |
bladder | 100% | 2779.86 | 21 / 21 | 99% | 16.89 | 500 / 504 |
skin | 100% | 3170.96 | 1808 / 1809 | 99% | 23.98 | 468 / 472 |
kidney | 100% | 1957.74 | 89 / 89 | 99% | 20.16 | 892 / 901 |
ovary | 100% | 3135.38 | 180 / 180 | 99% | 15.35 | 424 / 430 |
liver | 100% | 1107.55 | 225 / 226 | 99% | 12.07 | 401 / 406 |
adrenal gland | 100% | 2725.37 | 258 / 258 | 96% | 18.63 | 220 / 230 |
adipose | 100% | 2399.35 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2533.97 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 16.60 | 29 / 29 |
muscle | 100% | 2856.52 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 2426.92 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 18.33 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 5.39 | 1 / 1 |
eye | 0% | 0 | 0 / 0 | 99% | 20.77 | 79 / 80 |
heart | 99% | 2370.08 | 850 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 79% | 1335.36 | 733 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0015031 | Biological process | protein transport |
GO_2000623 | Biological process | negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay |
GO_0006890 | Biological process | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum |
GO_0000956 | Biological process | nuclear-transcribed mRNA catabolic process |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005829 | Cellular component | cytosol |
GO_0070939 | Cellular component | Dsl1/NZR complex |
GO_0016020 | Cellular component | membrane |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0000149 | Molecular function | SNARE binding |
GO_0005515 | Molecular function | protein binding |
Gene name | NBAS |
Protein name | NBAS subunit of NRZ tethering complex (Neuroblastoma-amplified gene protein) (Neuroblastoma-amplified sequence) Neuroblastoma-amplified sequence Alternative protein NBAS NBAS subunit of NRZ tethering complex |
Synonyms | NAG |
Description | FUNCTION: Involved in Golgi-to-endoplasmic reticulum (ER) retrograde transport; the function is proposed to depend on its association in the NRZ complex which is believed to play a role in SNARE assembly at the ER . Required for normal embryonic development (By similarity). May play a role in the nonsense-mediated decay pathway of mRNAs containing premature stop codons (By similarity). . |
Accessions | A0A8V8TPT1 A0A8V8TPL8 ENST00000427792.1 A0A8V8TP87 ENST00000429842.1 ENST00000700069.1 ENST00000281513.10 [A2RRP1-1] H7C1Y9 H7C1U4 ENST00000442506.5 L8E9V8 A0A8V8TPS6 A2RRP1 G1UI26 ENST00000700063.1 H7BZU5 A0A8V8TQK6 A0A8V8TQY0 H0Y5G7 ENST00000423602.1 ENST00000700064.1 ENST00000700066.1 ENST00000700061.1 ENST00000433283.5 A0A8V8TQX6 ENST00000700062.1 H7BZR3 ENST00000700070.1 |