Name | Number of supported studies | Average coverage | |
---|---|---|---|
pericyte | 41 studies | 51% ± 19% | |
smooth muscle cell | 32 studies | 52% ± 17% | |
fibroblast | 30 studies | 38% ± 16% | |
endothelial cell | 24 studies | 39% ± 20% | |
astrocyte | 21 studies | 47% ± 19% | |
endothelial cell of lymphatic vessel | 18 studies | 32% ± 12% | |
oligodendrocyte | 17 studies | 49% ± 16% | |
oligodendrocyte precursor cell | 15 studies | 42% ± 14% | |
ciliated cell | 14 studies | 30% ± 11% | |
connective tissue cell | 14 studies | 40% ± 21% | |
glutamatergic neuron | 13 studies | 82% ± 15% | |
neuron | 13 studies | 75% ± 25% | |
myofibroblast cell | 12 studies | 31% ± 17% | |
GABAergic neuron | 11 studies | 71% ± 20% | |
microglial cell | 11 studies | 39% ± 14% | |
retinal cone cell | 9 studies | 87% ± 12% | |
retinal rod cell | 9 studies | 74% ± 15% | |
retinal ganglion cell | 8 studies | 92% ± 17% | |
interneuron | 8 studies | 75% ± 19% | |
amacrine cell | 7 studies | 55% ± 24% | |
retina horizontal cell | 7 studies | 69% ± 19% | |
Mueller cell | 6 studies | 60% ± 15% | |
abnormal cell | 5 studies | 45% ± 20% | |
endothelial cell of artery | 5 studies | 31% ± 12% | |
retinal bipolar neuron | 5 studies | 40% ± 17% | |
glial cell | 5 studies | 37% ± 17% | |
OFF-bipolar cell | 5 studies | 63% ± 23% | |
ON-bipolar cell | 5 studies | 52% ± 27% | |
capillary endothelial cell | 5 studies | 27% ± 6% | |
pancreatic A cell | 4 studies | 64% ± 17% | |
type B pancreatic cell | 4 studies | 73% ± 20% | |
progenitor cell | 4 studies | 38% ± 16% | |
granule cell | 4 studies | 80% ± 14% | |
GABAergic amacrine cell | 4 studies | 53% ± 8% | |
glycinergic amacrine cell | 4 studies | 34% ± 13% | |
cardiac muscle cell | 4 studies | 21% ± 4% | |
mesothelial cell | 4 studies | 22% ± 2% | |
endothelial cell of vascular tree | 4 studies | 32% ± 18% | |
pancreatic D cell | 3 studies | 83% ± 19% | |
macrophage | 3 studies | 46% ± 5% | |
differentiation-committed oligodendrocyte precursor | 3 studies | 56% ± 5% | |
GABAergic interneuron | 3 studies | 74% ± 5% | |
epithelial cell | 3 studies | 21% ± 3% | |
rod bipolar cell | 3 studies | 40% ± 11% | |
basal cell | 3 studies | 20% ± 6% | |
muscle cell | 3 studies | 74% ± 7% | |
neural progenitor cell | 3 studies | 75% ± 8% | |
ependymal cell | 3 studies | 60% ± 20% | |
enteroendocrine cell | 3 studies | 37% ± 16% | |
Schwann cell | 3 studies | 58% ± 25% | |
adipocyte | 3 studies | 20% ± 5% | |
myoepithelial cell | 3 studies | 37% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 46314.85 | 2638 / 2642 | 100% | 205.23 | 704 / 705 |
prostate | 84% | 12576.81 | 207 / 245 | 81% | 25.56 | 408 / 502 |
breast | 93% | 11194.26 | 427 / 459 | 70% | 18.12 | 778 / 1118 |
adrenal gland | 63% | 4924.06 | 162 / 258 | 92% | 115.10 | 212 / 230 |
skin | 76% | 10078.04 | 1377 / 1809 | 60% | 21.93 | 284 / 472 |
esophagus | 65% | 14061.93 | 935 / 1445 | 63% | 23.58 | 115 / 183 |
bladder | 95% | 16259.43 | 20 / 21 | 25% | 7.41 | 125 / 504 |
uterus | 83% | 8677.35 | 141 / 170 | 35% | 18.48 | 159 / 459 |
blood vessel | 100% | 39460.06 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lung | 42% | 2906.29 | 243 / 578 | 57% | 23.99 | 661 / 1155 |
adipose | 99% | 16005.75 | 1191 / 1204 | 0% | 0 | 0 / 0 |
thymus | 61% | 4444.62 | 398 / 653 | 35% | 5.39 | 214 / 605 |
kidney | 10% | 655.21 | 9 / 89 | 73% | 23.79 | 654 / 901 |
intestine | 63% | 6337.70 | 605 / 966 | 18% | 4.54 | 97 / 527 |
heart | 79% | 8939.70 | 682 / 861 | 0% | 0 | 0 / 0 |
ovary | 27% | 2379.41 | 49 / 180 | 49% | 11.45 | 209 / 430 |
pancreas | 0% | 21.83 | 1 / 328 | 75% | 19.80 | 133 / 178 |
stomach | 40% | 7773.86 | 143 / 359 | 34% | 12.45 | 96 / 286 |
tonsil | 0% | 0 | 0 / 0 | 38% | 6.04 | 17 / 45 |
liver | 0% | 20.58 | 1 / 226 | 12% | 2.22 | 47 / 406 |
eye | 0% | 0 | 0 / 0 | 10% | 3.97 | 8 / 80 |
muscle | 8% | 524.57 | 67 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 1% | 46.11 | 6 / 929 | 0% | 0 | 0 / 0 |
spleen | 0% | 36.31 | 1 / 241 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0032355 | Biological process | response to estradiol |
GO_0045773 | Biological process | positive regulation of axon extension |
GO_0031175 | Biological process | neuron projection development |
GO_0047497 | Biological process | mitochondrion transport along microtubule |
GO_0001764 | Biological process | neuron migration |
GO_0033189 | Biological process | response to vitamin A |
GO_0014012 | Biological process | peripheral nervous system axon regeneration |
GO_0071363 | Biological process | cellular response to growth factor stimulus |
GO_0007026 | Biological process | negative regulation of microtubule depolymerization |
GO_0031116 | Biological process | positive regulation of microtubule polymerization |
GO_0031114 | Biological process | regulation of microtubule depolymerization |
GO_0007409 | Biological process | axonogenesis |
GO_0032387 | Biological process | negative regulation of intracellular transport |
GO_0051915 | Biological process | induction of synaptic plasticity by chemical substance |
GO_0071895 | Biological process | odontoblast differentiation |
GO_0071375 | Biological process | cellular response to peptide hormone stimulus |
GO_0009743 | Biological process | response to carbohydrate |
GO_0000226 | Biological process | microtubule cytoskeleton organization |
GO_0048675 | Biological process | axon extension |
GO_0009612 | Biological process | response to mechanical stimulus |
GO_0007416 | Biological process | synapse assembly |
GO_0009410 | Biological process | response to xenobiotic stimulus |
GO_0045666 | Biological process | positive regulation of neuron differentiation |
GO_0016358 | Biological process | dendrite development |
GO_0001578 | Biological process | microtubule bundle formation |
GO_0017085 | Biological process | response to insecticide |
GO_0061162 | Biological process | establishment of monopolar cell polarity |
GO_0021700 | Biological process | developmental maturation |
GO_0097441 | Cellular component | basal dendrite |
GO_0005886 | Cellular component | plasma membrane |
GO_0005874 | Cellular component | microtubule |
GO_0043197 | Cellular component | dendritic spine |
GO_0001750 | Cellular component | photoreceptor outer segment |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0036477 | Cellular component | somatodendritic compartment |
GO_0043204 | Cellular component | perikaryon |
GO_0043025 | Cellular component | neuronal cell body |
GO_0030425 | Cellular component | dendrite |
GO_0043196 | Cellular component | varicosity |
GO_0097457 | Cellular component | hippocampal mossy fiber |
GO_0005829 | Cellular component | cytosol |
GO_0045202 | Cellular component | synapse |
GO_0014069 | Cellular component | postsynaptic density |
GO_0030426 | Cellular component | growth cone |
GO_0097440 | Cellular component | apical dendrite |
GO_0030424 | Cellular component | axon |
GO_0005875 | Cellular component | microtubule associated complex |
GO_0005543 | Molecular function | phospholipid binding |
GO_0044877 | Molecular function | protein-containing complex binding |
GO_0003779 | Molecular function | actin binding |
GO_0005198 | Molecular function | structural molecule activity |
GO_0008017 | Molecular function | microtubule binding |
GO_0005515 | Molecular function | protein binding |
Gene name | MAP1B |
Protein name | Microtubule-associated protein 1B MAP1B protein Microtubule associated protein 1B Microtubule-associated protein 1B (MAP-1B) [Cleaved into: MAP1B heavy chain; MAP1 light chain LC1] |
Synonyms | hCG_37848 |
Description | FUNCTION: Facilitates tyrosination of alpha-tubulin in neuronal microtubules (By similarity). Phosphorylated MAP1B is required for proper microtubule dynamics and plays a role in the cytoskeletal changes that accompany neuronal differentiation and neurite extension . Possibly MAP1B binds to at least two tubulin subunits in the polymer, and this bridging of subunits might be involved in nucleating microtubule polymerization and in stabilizing microtubules. Acts as a positive cofactor in DAPK1-mediated autophagic vesicle formation and membrane blebbing. . |
Accessions | ENST00000512974.5 Q05BW8 A5D6X1 A5D8X6 Q32NB7 Q6PJD3 ENST00000511641.2 Q86X89 ENST00000504492.1 Q4VBY4 D6RA32 A2BDK6 P46821 D6RCL2 D6RA40 D6RGJ3 ENST00000513526.6 ENST00000296755.12 |