HPCAL1 | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
endothelial cell	35 studies	29% ± 10%	Explore
macrophage	17 studies	25% ± 10%	Explore
CD4-positive, alpha-beta T cell	13 studies	20% ± 4%	Explore
type I pneumocyte	12 studies	52% ± 12%	Explore
capillary endothelial cell	12 studies	29% ± 7%	Explore
classical monocyte	11 studies	23% ± 9%	Explore
glutamatergic neuron	10 studies	27% ± 13%	Explore
type II pneumocyte	10 studies	33% ± 13%	Explore
T cell	10 studies	20% ± 6%	Explore
endothelial cell of artery	9 studies	30% ± 10%	Explore
goblet cell	9 studies	50% ± 16%	Explore
vein endothelial cell	9 studies	28% ± 11%	Explore
epithelial cell	9 studies	30% ± 15%	Explore
regulatory T cell	8 studies	18% ± 2%	Explore
endothelial cell of vascular tree	8 studies	24% ± 8%	Explore
memory B cell	8 studies	18% ± 2%	Explore
non-classical monocyte	7 studies	24% ± 8%	Explore
B cell	7 studies	19% ± 4%	Explore
endothelial cell of lymphatic vessel	7 studies	23% ± 4%	Explore
natural killer cell	7 studies	19% ± 3%	Explore
monocyte	7 studies	23% ± 6%	Explore
CD16-negative, CD56-bright natural killer cell, human	6 studies	19% ± 3%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	6 studies	18% ± 2%	Explore
myeloid cell	6 studies	32% ± 14%	Explore
T follicular helper cell	6 studies	20% ± 3%	Explore
mast cell	6 studies	21% ± 4%	Explore
CD4-positive, alpha-beta memory T cell	5 studies	22% ± 5%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	5 studies	18% ± 3%	Explore
microglial cell	5 studies	23% ± 5%	Explore
CD16-positive, CD56-dim natural killer cell, human	5 studies	17% ± 2%	Explore
mucosal invariant T cell	5 studies	17% ± 1%	Explore
retina horizontal cell	5 studies	47% ± 7%	Explore
CD8-positive, alpha-beta T cell	5 studies	22% ± 7%	Explore
neuron	4 studies	28% ± 7%	Explore
gamma-delta T cell	4 studies	22% ± 5%	Explore
retinal bipolar neuron	4 studies	33% ± 15%	Explore
abnormal cell	4 studies	32% ± 11%	Explore
dendritic cell	4 studies	27% ± 9%	Explore
mesothelial cell	4 studies	22% ± 6%	Explore
GABAergic neuron	4 studies	34% ± 15%	Explore
enteroendocrine cell	4 studies	21% ± 10%	Explore
alveolar macrophage	4 studies	30% ± 12%	Explore
conventional dendritic cell	3 studies	35% ± 11%	Explore
effector memory CD8-positive, alpha-beta T cell	3 studies	20% ± 2%	Explore
hematopoietic precursor cell	3 studies	22% ± 5%	Explore
mature NK T cell	3 studies	19% ± 3%	Explore
glomerular endothelial cell	3 studies	26% ± 5%	Explore
platelet	3 studies	17% ± 2%	Explore
pro-B cell	3 studies	26% ± 4%	Explore
retinal pigment epithelial cell	3 studies	33% ± 7%	Explore
mononuclear phagocyte	3 studies	23% ± 7%	Explore
lymphocyte	3 studies	28% ± 3%	Explore
rod bipolar cell	3 studies	42% ± 11%	Explore
hepatocyte	3 studies	53% ± 25%	Explore
effector memory CD4-positive, alpha-beta T cell	3 studies	21% ± 2%	Explore
megakaryocyte	3 studies	32% ± 8%	Explore
interneuron	3 studies	27% ± 7%	Explore
innate lymphoid cell	3 studies	18% ± 1%	Explore
hematopoietic stem cell	3 studies	20% ± 3%	Explore
plasmacytoid dendritic cell	3 studies	20% ± 3%	Explore
CD8-positive, alpha-beta memory T cell	3 studies	22% ± 3%	Explore
astrocyte	3 studies	35% ± 5%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
lung	10 studies	22% ± 5%	Explore
peripheral blood	8 studies	20% ± 5%	Explore
brain	7 studies	25% ± 7%	Explore
eye	4 studies	21% ± 3%	Explore
lymph node	3 studies	24% ± 9%	Explore
liver	3 studies	27% ± 12%	Explore
intestine	3 studies	18% ± 2%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
stomach	100%	4278.79	359 / 359	100%	32.81	285 / 286
liver	100%	2754.30	226 / 226	99%	20.87	403 / 406
thymus	100%	3132.49	651 / 653	100%	30.50	602 / 605
lung	100%	9064.84	578 / 578	99%	32.61	1143 / 1155
brain	99%	10230.99	2617 / 2642	100%	26.04	703 / 705
intestine	99%	3531.85	961 / 966	99%	40.16	523 / 527
uterus	100%	6501.39	170 / 170	98%	24.13	452 / 459
pancreas	100%	2309.00	328 / 328	98%	33.41	175 / 178
breast	100%	2624.13	458 / 459	98%	21.74	1099 / 1118
prostate	99%	2018.60	242 / 245	99%	18.73	496 / 502
kidney	100%	4882.64	89 / 89	96%	84.43	865 / 901
bladder	100%	1843.81	21 / 21	96%	27.01	483 / 504
adrenal gland	100%	4352.36	258 / 258	95%	35.82	219 / 230
skin	93%	1520.15	1681 / 1809	100%	54.65	472 / 472
esophagus	89%	1463.48	1279 / 1445	98%	23.38	180 / 183
ovary	83%	1156.83	150 / 180	99%	27.04	427 / 430
eye	0%	0	0 / 0	100%	29.34	80 / 80
lymph node	0%	0	0 / 0	100%	19.67	29 / 29
spleen	100%	4172.51	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	7.87	1 / 1
adipose	99%	3179.03	1196 / 1204	0%	0	0 / 0
peripheral blood	98%	5818.42	915 / 929	0%	0	0 / 0
heart	97%	1849.00	839 / 861	0%	0	0 / 0
tonsil	0%	0	0 / 0	96%	16.00	43 / 45
blood vessel	93%	1661.80	1248 / 1335	0%	0	0 / 0
muscle	60%	935.15	484 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0016020	Cellular component	membrane
GO_0005509	Molecular function	calcium ion binding
GO_0005515	Molecular function	protein binding

IV. Literature review

[source]

Gene name	HPCAL1
Protein name	Hippocalcin-like protein 1 Hippocalcin-like protein 1 (Calcium-binding protein BDR-1) (HLP2) (Visinin-like protein 3) (VILIP-3) Hippocalcin like 1
Synonyms	hCG_23828 BDR1
Description	FUNCTION: May be involved in the calcium-dependent regulation of rhodopsin phosphorylation. FUNCTION: May be involved in the calcium-dependent regulation of rhodopsin phosphorylation. . FUNCTION: May be involved in the calcium-dependent regulation of rhodopsin phosphorylation. . FUNCTION: May be involved in the calcium-dependent regulation of rhodopsin phosphorylation. .
Accessions	H7BZC1 ENST00000307845.8 P37235 ENST00000381765.7 Q6FGY1 ENST00000613496.4 ENST00000620771.4 ENST00000622018.4 C9JW46 E9PC71 ENST00000419810.6 ENST00000422133.1 ENST00000423674.5

HPCAL1 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review