Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| pericyte | 35 studies | 35% ± 13% | |
| endothelial cell | 33 studies | 35% ± 13% | |
| fibroblast | 27 studies | 31% ± 12% | |
| smooth muscle cell | 25 studies | 34% ± 15% | |
| epithelial cell | 22 studies | 51% ± 24% | |
| ciliated cell | 20 studies | 68% ± 22% | |
| basal cell | 19 studies | 36% ± 15% | |
| macrophage | 17 studies | 26% ± 10% | |
| mast cell | 16 studies | 24% ± 5% | |
| astrocyte | 15 studies | 35% ± 15% | |
| mesothelial cell | 13 studies | 43% ± 13% | |
| type I pneumocyte | 12 studies | 58% ± 15% | |
| myeloid cell | 12 studies | 28% ± 10% | |
| endothelial cell of vascular tree | 12 studies | 43% ± 12% | |
| type II pneumocyte | 11 studies | 40% ± 18% | |
| secretory cell | 11 studies | 43% ± 22% | |
| endothelial cell of artery | 11 studies | 36% ± 13% | |
| endothelial cell of lymphatic vessel | 11 studies | 24% ± 10% | |
| goblet cell | 10 studies | 36% ± 15% | |
| vein endothelial cell | 10 studies | 30% ± 11% | |
| club cell | 9 studies | 27% ± 13% | |
| monocyte | 9 studies | 24% ± 11% | |
| non-classical monocyte | 9 studies | 23% ± 6% | |
| capillary endothelial cell | 9 studies | 27% ± 9% | |
| enterocyte | 9 studies | 50% ± 23% | |
| adipocyte | 9 studies | 31% ± 10% | |
| myofibroblast cell | 8 studies | 29% ± 15% | |
| plasmacytoid dendritic cell | 8 studies | 23% ± 6% | |
| epithelial cell of proximal tubule | 7 studies | 52% ± 16% | |
| enteroendocrine cell | 7 studies | 45% ± 23% | |
| connective tissue cell | 7 studies | 30% ± 12% | |
| respiratory goblet cell | 6 studies | 30% ± 18% | |
| classical monocyte | 6 studies | 26% ± 8% | |
| conventional dendritic cell | 6 studies | 25% ± 7% | |
| kidney loop of Henle epithelial cell | 6 studies | 80% ± 8% | |
| renal alpha-intercalated cell | 6 studies | 81% ± 27% | |
| abnormal cell | 6 studies | 47% ± 25% | |
| alveolar macrophage | 6 studies | 22% ± 6% | |
| ionocyte | 5 studies | 30% ± 6% | |
| neutrophil | 5 studies | 33% ± 10% | |
| kidney distal convoluted tubule epithelial cell | 5 studies | 61% ± 30% | |
| transit amplifying cell | 5 studies | 40% ± 7% | |
| renal principal cell | 5 studies | 59% ± 33% | |
| progenitor cell | 5 studies | 50% ± 25% | |
| cardiac muscle cell | 5 studies | 24% ± 5% | |
| pancreatic A cell | 4 studies | 89% ± 6% | |
| type B pancreatic cell | 4 studies | 68% ± 13% | |
| leukocyte | 4 studies | 19% ± 3% | |
| kidney connecting tubule epithelial cell | 4 studies | 86% ± 6% | |
| T cell | 4 studies | 29% ± 13% | |
| retinal ganglion cell | 4 studies | 57% ± 28% | |
| retinal pigment epithelial cell | 4 studies | 54% ± 16% | |
| Mueller cell | 4 studies | 41% ± 8% | |
| luminal hormone-sensing cell of mammary gland | 4 studies | 31% ± 8% | |
| muscle cell | 4 studies | 38% ± 15% | |
| GABAergic neuron | 4 studies | 31% ± 9% | |
| glutamatergic neuron | 4 studies | 38% ± 11% | |
| dendritic cell | 4 studies | 31% ± 15% | |
| brush cell | 4 studies | 26% ± 6% | |
| oligodendrocyte | 4 studies | 23% ± 5% | |
| deuterosomal cell | 3 studies | 24% ± 3% | |
| pancreatic D cell | 3 studies | 75% ± 15% | |
| renal beta-intercalated cell | 3 studies | 69% ± 34% | |
| erythroblast | 3 studies | 21% ± 3% | |
| intestinal crypt stem cell | 3 studies | 44% ± 8% | |
| placental villous trophoblast | 3 studies | 66% ± 13% | |
| plasma cell | 3 studies | 23% ± 7% | |
| neuroendocrine cell | 3 studies | 48% ± 22% | |
| serous secreting cell | 3 studies | 22% ± 5% | |
| glial cell | 3 studies | 18% ± 1% | |
| mononuclear phagocyte | 3 studies | 21% ± 0% | |
| intermediate monocyte | 3 studies | 24% ± 4% | |
| gamma-delta T cell | 3 studies | 22% ± 2% | |
| luminal cell of prostate epithelium | 3 studies | 33% ± 9% | |
| pancreatic ductal cell | 3 studies | 80% ± 4% | |
| hepatocyte | 3 studies | 45% ± 19% | |
| Schwann cell | 3 studies | 24% ± 6% | |
| melanocyte | 3 studies | 32% ± 6% | |
| interneuron | 3 studies | 33% ± 10% | |
| neuron | 3 studies | 32% ± 2% | |
| erythrocyte | 3 studies | 30% ± 12% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| lung | 16 studies | 33% ± 13% | |
| intestine | 9 studies | 28% ± 17% | |
| kidney | 8 studies | 39% ± 16% | |
| eye | 7 studies | 23% ± 7% | |
| brain | 6 studies | 27% ± 6% | |
| uterus | 5 studies | 32% ± 15% | |
| pancreas | 4 studies | 72% ± 15% | |
| heart | 4 studies | 21% ± 2% | |
| prostate | 4 studies | 42% ± 17% | |
| stomach | 4 studies | 28% ± 10% | |
| breast | 4 studies | 27% ± 6% | |
| placenta | 3 studies | 34% ± 13% | |
| adipose | 3 studies | 25% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| adrenal gland | 100% | 7066.10 | 258 / 258 | 100% | 218.48 | 230 / 230 |
| kidney | 100% | 9909.47 | 89 / 89 | 100% | 215.26 | 900 / 901 |
| stomach | 100% | 24811.70 | 359 / 359 | 100% | 341.89 | 285 / 286 |
| intestine | 100% | 3094.81 | 966 / 966 | 100% | 264.50 | 525 / 527 |
| pancreas | 100% | 2308.29 | 328 / 328 | 99% | 373.28 | 177 / 178 |
| thymus | 100% | 3791.79 | 653 / 653 | 99% | 190.25 | 601 / 605 |
| ovary | 98% | 1658.35 | 177 / 180 | 100% | 124.95 | 430 / 430 |
| lung | 100% | 4858.37 | 577 / 578 | 97% | 133.64 | 1125 / 1155 |
| prostate | 99% | 1724.64 | 242 / 245 | 96% | 59.12 | 483 / 502 |
| breast | 100% | 3714.28 | 459 / 459 | 93% | 66.71 | 1037 / 1118 |
| bladder | 100% | 2202.67 | 21 / 21 | 92% | 111.74 | 464 / 504 |
| liver | 90% | 1240.65 | 204 / 226 | 99% | 128.90 | 403 / 406 |
| brain | 98% | 2585.14 | 2601 / 2642 | 88% | 66.31 | 622 / 705 |
| uterus | 99% | 2029.82 | 168 / 170 | 88% | 87.76 | 403 / 459 |
| skin | 86% | 1217.32 | 1552 / 1809 | 98% | 123.05 | 463 / 472 |
| esophagus | 75% | 1841.40 | 1079 / 1445 | 90% | 213.89 | 164 / 183 |
| adipose | 100% | 4540.28 | 1204 / 1204 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 100% | 116.87 | 80 / 80 |
| lymph node | 0% | 0 | 0 / 0 | 100% | 75.99 | 29 / 29 |
| muscle | 100% | 7490.99 | 803 / 803 | 0% | 0 | 0 / 0 |
| ureter | 0% | 0 | 0 / 0 | 100% | 122.88 | 1 / 1 |
| peripheral blood | 100% | 11380.64 | 927 / 929 | 0% | 0 | 0 / 0 |
| blood vessel | 100% | 2901.79 | 1332 / 1335 | 0% | 0 | 0 / 0 |
| spleen | 98% | 1966.76 | 235 / 241 | 0% | 0 | 0 / 0 |
| heart | 96% | 2594.70 | 830 / 861 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 78% | 41.10 | 35 / 45 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0008150 | Biological process | biological_process |
| GO_0070062 | Cellular component | extracellular exosome |
| GO_0070821 | Cellular component | tertiary granule membrane |
| GO_0005886 | Cellular component | plasma membrane |
| GO_0005515 | Molecular function | protein binding |
| GO_0003674 | Molecular function | molecular_function |
| Gene name | CYSTM1 |
| Protein name | Cysteine-rich and transmembrane domain-containing protein 1 |
| Synonyms | hCG_45310 C5orf32 ORF1-FL49 |
| Description | |
| Accessions | ENST00000261811.6 A0A2R8YEW2 ENST00000644078.1 Q9H1C7 |