Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2517.10 | 1445 / 1445 | 100% | 40.68 | 183 / 183 |
ovary | 100% | 3098.47 | 180 / 180 | 100% | 24.97 | 430 / 430 |
breast | 100% | 2925.32 | 459 / 459 | 100% | 44.38 | 1117 / 1118 |
lung | 100% | 2111.69 | 577 / 578 | 100% | 34.07 | 1155 / 1155 |
prostate | 100% | 2341.73 | 245 / 245 | 100% | 31.98 | 501 / 502 |
brain | 100% | 2192.22 | 2634 / 2642 | 100% | 38.37 | 705 / 705 |
stomach | 100% | 1923.84 | 359 / 359 | 100% | 31.82 | 285 / 286 |
uterus | 100% | 2931.10 | 170 / 170 | 100% | 37.77 | 457 / 459 |
intestine | 100% | 2569.47 | 966 / 966 | 99% | 32.50 | 524 / 527 |
bladder | 100% | 3026.33 | 21 / 21 | 99% | 32.31 | 500 / 504 |
thymus | 100% | 2314.07 | 653 / 653 | 99% | 29.65 | 598 / 605 |
pancreas | 99% | 1366.66 | 325 / 328 | 99% | 25.51 | 177 / 178 |
liver | 100% | 1498.23 | 226 / 226 | 98% | 24.25 | 398 / 406 |
skin | 100% | 3007.67 | 1809 / 1809 | 98% | 43.42 | 462 / 472 |
adrenal gland | 100% | 2832.13 | 258 / 258 | 97% | 41.08 | 224 / 230 |
kidney | 100% | 1605.71 | 89 / 89 | 96% | 24.62 | 862 / 901 |
adipose | 100% | 2991.40 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 3493.53 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 32.10 | 29 / 29 |
muscle | 100% | 3219.62 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 2235.57 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 35.81 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 7.67 | 1 / 1 |
heart | 97% | 1879.14 | 836 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 93% | 21.79 | 74 / 80 |
peripheral blood | 91% | 1858.96 | 843 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006281 | Biological process | DNA repair |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0000398 | Biological process | mRNA splicing, via spliceosome |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0000077 | Biological process | DNA damage checkpoint signaling |
GO_0005681 | Cellular component | spliceosomal complex |
GO_0016020 | Cellular component | membrane |
GO_0016607 | Cellular component | nuclear speck |
GO_0005654 | Cellular component | nucleoplasm |
GO_0071007 | Cellular component | U2-type catalytic step 2 spliceosome |
GO_0000974 | Cellular component | Prp19 complex |
GO_0005737 | Cellular component | cytoplasm |
GO_0071013 | Cellular component | catalytic step 2 spliceosome |
GO_0005662 | Cellular component | DNA replication factor A complex |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0001228 | Molecular function | DNA-binding transcription activator activity, RNA polymerase II-specific |
GO_0000977 | Molecular function | RNA polymerase II transcription regulatory region sequence-specific DNA binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0042802 | Molecular function | identical protein binding |
GO_0003723 | Molecular function | RNA binding |
GO_0071987 | Molecular function | WD40-repeat domain binding |
GO_0005515 | Molecular function | protein binding |
Gene name | CDC5L |
Protein name | Cell division cycle 5-like protein (Cdc5-like protein) (Pombe cdc5-related protein) |
Synonyms | PCDC5RP KIAA0432 |
Description | FUNCTION: DNA-binding protein involved in cell cycle control. May act as a transcription activator. Plays a role in pre-mRNA splicing as core component of precatalytic, catalytic and postcatalytic spliceosomal complexes . Component of the PRP19-CDC5L complex that forms an integral part of the spliceosome and is required for activating pre-mRNA splicing. The PRP19-CDC5L complex may also play a role in the response to DNA damage (DDR) . As a component of the minor spliceosome, involved in the splicing of U12-type introns in pre-mRNAs (Probable). . |
Accessions | Q99459 ENST00000371477.4 |