CAT report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
macrophage	27 studies	26% ± 10%	Explore
conventional dendritic cell	23 studies	37% ± 17%	Explore
non-classical monocyte	19 studies	29% ± 13%	Explore
plasmacytoid dendritic cell	17 studies	51% ± 15%	Explore
ciliated cell	17 studies	34% ± 12%	Explore
classical monocyte	17 studies	27% ± 12%	Explore
monocyte	15 studies	25% ± 9%	Explore
B cell	14 studies	23% ± 7%	Explore
pericyte	14 studies	22% ± 6%	Explore
type I pneumocyte	12 studies	38% ± 12%	Explore
endothelial cell	12 studies	22% ± 5%	Explore
fibroblast	12 studies	28% ± 8%	Explore
type II pneumocyte	10 studies	44% ± 15%	Explore
epithelial cell	10 studies	34% ± 13%	Explore
erythrocyte	10 studies	51% ± 25%	Explore
dendritic cell	9 studies	48% ± 23%	Explore
adipocyte	9 studies	44% ± 17%	Explore
memory B cell	8 studies	22% ± 5%	Explore
smooth muscle cell	7 studies	22% ± 6%	Explore
epithelial cell of proximal tubule	7 studies	37% ± 8%	Explore
myofibroblast cell	7 studies	20% ± 3%	Explore
naive B cell	7 studies	22% ± 5%	Explore
alveolar macrophage	6 studies	32% ± 6%	Explore
erythroblast	6 studies	56% ± 28%	Explore
abnormal cell	6 studies	21% ± 5%	Explore
hematopoietic stem cell	6 studies	63% ± 12%	Explore
basal cell	6 studies	30% ± 11%	Explore
astrocyte	6 studies	27% ± 9%	Explore
hematopoietic precursor cell	5 studies	55% ± 15%	Explore
kidney loop of Henle epithelial cell	5 studies	29% ± 6%	Explore
renal alpha-intercalated cell	5 studies	47% ± 10%	Explore
connective tissue cell	5 studies	22% ± 4%	Explore
myeloid cell	5 studies	32% ± 11%	Explore
hepatocyte	5 studies	59% ± 17%	Explore
oligodendrocyte	5 studies	19% ± 3%	Explore
natural killer cell	4 studies	19% ± 3%	Explore
pro-B cell	4 studies	30% ± 4%	Explore
enterocyte	4 studies	21% ± 3%	Explore
CD8-positive, alpha-beta T cell	4 studies	18% ± 3%	Explore
regulatory T cell	4 studies	20% ± 3%	Explore
ionocyte	3 studies	22% ± 2%	Explore
mononuclear phagocyte	3 studies	40% ± 13%	Explore
CD4-positive, alpha-beta T cell	3 studies	18% ± 4%	Explore
effector memory CD8-positive, alpha-beta T cell	3 studies	17% ± 1%	Explore
glomerular endothelial cell	3 studies	19% ± 2%	Explore
kidney distal convoluted tubule epithelial cell	3 studies	31% ± 12%	Explore
leukocyte	3 studies	23% ± 3%	Explore
common myeloid progenitor	3 studies	50% ± 24%	Explore
precursor B cell	3 studies	34% ± 5%	Explore
CD16-positive, CD56-dim natural killer cell, human	3 studies	20% ± 4%	Explore
immature B cell	3 studies	29% ± 10%	Explore
progenitor cell	3 studies	45% ± 20%	Explore
capillary endothelial cell	3 studies	16% ± 0%	Explore
cardiac muscle cell	3 studies	22% ± 5%	Explore
endothelial cell of vascular tree	3 studies	17% ± 1%	Explore
brush cell	3 studies	19% ± 1%	Explore
enteroendocrine cell	3 studies	23% ± 7%	Explore
glial cell	3 studies	25% ± 8%	Explore
group 3 innate lymphoid cell	3 studies	40% ± 2%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
lung	12 studies	24% ± 6%	Explore
peripheral blood	10 studies	24% ± 9%	Explore
kidney	7 studies	24% ± 7%	Explore
liver	7 studies	37% ± 23%	Explore
bone marrow	4 studies	26% ± 8%	Explore
intestine	4 studies	22% ± 8%	Explore
adipose	4 studies	28% ± 11%	Explore
brain	3 studies	20% ± 5%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
stomach	100%	5180.96	358 / 359	100%	92.34	285 / 286
liver	100%	21527.79	225 / 226	100%	251.11	405 / 406
thymus	100%	11047.58	653 / 653	99%	224.42	599 / 605
breast	100%	14165.56	459 / 459	99%	87.55	1103 / 1118
prostate	99%	4566.10	243 / 245	99%	99.36	499 / 502
lung	100%	8456.20	577 / 578	99%	79.40	1138 / 1155
kidney	100%	10062.30	89 / 89	98%	149.87	886 / 901
intestine	100%	5873.22	963 / 966	98%	84.81	518 / 527
ovary	98%	3745.18	177 / 180	99%	73.95	427 / 430
pancreas	98%	3978.99	321 / 328	99%	71.01	177 / 178
bladder	100%	5897.24	21 / 21	96%	78.78	484 / 504
esophagus	94%	3959.41	1356 / 1445	96%	61.82	176 / 183
skin	99%	6231.64	1795 / 1809	91%	61.46	428 / 472
uterus	99%	5039.14	169 / 170	87%	51.04	399 / 459
brain	63%	1509.44	1663 / 2642	100%	65.50	702 / 705
adrenal gland	100%	11438.05	258 / 258	56%	29.73	129 / 230
adipose	100%	15824.98	1204 / 1204	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	61.07	29 / 29
spleen	100%	6075.09	241 / 241	0%	0	0 / 0
muscle	99%	6513.53	798 / 803	0%	0	0 / 0
peripheral blood	99%	9257.78	921 / 929	0%	0	0 / 0
blood vessel	98%	4528.88	1313 / 1335	0%	0	0 / 0
heart	88%	3808.70	759 / 861	0%	0	0 / 0
tonsil	0%	0	0 / 0	87%	35.25	39 / 45
eye	0%	0	0 / 0	66%	24.92	53 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1