Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 24 studies | 50% ± 17% | |
astrocyte | 19 studies | 56% ± 19% | |
pericyte | 18 studies | 39% ± 20% | |
oligodendrocyte | 16 studies | 61% ± 17% | |
smooth muscle cell | 16 studies | 44% ± 15% | |
microglial cell | 15 studies | 49% ± 13% | |
oligodendrocyte precursor cell | 14 studies | 52% ± 17% | |
glutamatergic neuron | 13 studies | 60% ± 25% | |
macrophage | 12 studies | 38% ± 14% | |
fibroblast | 12 studies | 45% ± 14% | |
ciliated cell | 11 studies | 40% ± 25% | |
GABAergic neuron | 11 studies | 60% ± 22% | |
adipocyte | 9 studies | 54% ± 14% | |
epithelial cell | 7 studies | 38% ± 23% | |
mast cell | 7 studies | 27% ± 11% | |
endothelial cell of lymphatic vessel | 7 studies | 46% ± 14% | |
neuron | 6 studies | 55% ± 19% | |
interneuron | 6 studies | 65% ± 21% | |
mesothelial cell | 6 studies | 38% ± 16% | |
T cell | 6 studies | 41% ± 20% | |
B cell | 5 studies | 33% ± 10% | |
cardiac muscle cell | 5 studies | 46% ± 10% | |
myeloid cell | 5 studies | 35% ± 7% | |
monocyte | 5 studies | 46% ± 12% | |
basal cell | 5 studies | 52% ± 22% | |
club cell | 5 studies | 42% ± 14% | |
type I pneumocyte | 5 studies | 48% ± 9% | |
type II pneumocyte | 5 studies | 44% ± 13% | |
granule cell | 4 studies | 49% ± 10% | |
retinal bipolar neuron | 4 studies | 39% ± 22% | |
dendritic cell | 4 studies | 32% ± 10% | |
Mueller cell | 4 studies | 68% ± 15% | |
amacrine cell | 4 studies | 56% ± 8% | |
retina horizontal cell | 4 studies | 37% ± 12% | |
retinal cone cell | 4 studies | 49% ± 11% | |
retinal ganglion cell | 4 studies | 51% ± 17% | |
retinal rod cell | 4 studies | 43% ± 8% | |
natural killer cell | 4 studies | 39% ± 6% | |
leukocyte | 4 studies | 50% ± 3% | |
cholangiocyte | 3 studies | 40% ± 17% | |
differentiation-committed oligodendrocyte precursor | 3 studies | 53% ± 10% | |
GABAergic interneuron | 3 studies | 60% ± 7% | |
glial cell | 3 studies | 39% ± 5% | |
progenitor cell | 3 studies | 32% ± 3% | |
CD4-positive, alpha-beta T cell | 3 studies | 29% ± 6% | |
CD8-positive, alpha-beta T cell | 3 studies | 29% ± 9% | |
vein endothelial cell | 3 studies | 33% ± 13% | |
GABAergic amacrine cell | 3 studies | 48% ± 12% | |
OFF-bipolar cell | 3 studies | 40% ± 16% | |
ON-bipolar cell | 3 studies | 42% ± 18% | |
glycinergic amacrine cell | 3 studies | 45% ± 7% | |
rod bipolar cell | 3 studies | 62% ± 33% | |
endothelial cell of vascular tree | 3 studies | 45% ± 8% | |
hepatocyte | 3 studies | 69% ± 18% | |
retinal pigment epithelial cell | 3 studies | 48% ± 23% | |
muscle cell | 3 studies | 37% ± 18% | |
ependymal cell | 3 studies | 56% ± 22% | |
alveolar macrophage | 3 studies | 48% ± 7% | |
capillary endothelial cell | 3 studies | 53% ± 5% | |
myofibroblast cell | 3 studies | 47% ± 20% | |
respiratory goblet cell | 3 studies | 47% ± 17% | |
lymphocyte | 3 studies | 39% ± 9% | |
mucus secreting cell | 3 studies | 50% ± 15% | |
regulatory T cell | 3 studies | 30% ± 9% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 1644.91 | 2641 / 2642 | 100% | 9.65 | 703 / 705 |
prostate | 100% | 1654.80 | 245 / 245 | 100% | 8.30 | 500 / 502 |
skin | 100% | 1678.60 | 1807 / 1809 | 99% | 17.77 | 468 / 472 |
thymus | 100% | 1454.43 | 653 / 653 | 99% | 6.61 | 598 / 605 |
esophagus | 100% | 1466.47 | 1445 / 1445 | 98% | 7.53 | 180 / 183 |
lung | 100% | 1838.08 | 578 / 578 | 97% | 7.31 | 1126 / 1155 |
kidney | 100% | 1335.15 | 89 / 89 | 97% | 7.63 | 875 / 901 |
breast | 100% | 1498.59 | 459 / 459 | 97% | 7.48 | 1084 / 1118 |
bladder | 100% | 1760.14 | 21 / 21 | 96% | 6.67 | 484 / 504 |
uterus | 100% | 1508.52 | 170 / 170 | 96% | 6.28 | 439 / 459 |
pancreas | 98% | 615.52 | 322 / 328 | 97% | 5.55 | 173 / 178 |
ovary | 100% | 1090.64 | 180 / 180 | 95% | 5.99 | 409 / 430 |
stomach | 100% | 1164.47 | 359 / 359 | 94% | 4.52 | 270 / 286 |
adrenal gland | 100% | 1767.08 | 258 / 258 | 93% | 5.56 | 214 / 230 |
intestine | 100% | 1339.45 | 966 / 966 | 92% | 4.13 | 484 / 527 |
liver | 96% | 679.85 | 216 / 226 | 93% | 4.88 | 376 / 406 |
adipose | 100% | 1413.69 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2309.16 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 14.99 | 80 / 80 |
spleen | 100% | 1223.88 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 7.37 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 4.00 | 1 / 1 |
muscle | 100% | 1591.11 | 802 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 98% | 893.46 | 908 / 929 | 0% | 0 | 0 / 0 |
heart | 97% | 959.15 | 838 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 97% | 4.74 | 28 / 29 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0001525 | Biological process | angiogenesis |
GO_0043627 | Biological process | response to estrogen |
GO_0010595 | Biological process | positive regulation of endothelial cell migration |
GO_0071391 | Biological process | cellular response to estrogen stimulus |
GO_0043085 | Biological process | positive regulation of catalytic activity |
GO_0007267 | Biological process | cell-cell signaling |
GO_0042594 | Biological process | response to starvation |
GO_0006914 | Biological process | autophagy |
GO_0032956 | Biological process | regulation of actin cytoskeleton organization |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0000791 | Cellular component | euchromatin |
GO_0031252 | Cellular component | cell leading edge |
GO_0045111 | Cellular component | intermediate filament cytoskeleton |
GO_0005881 | Cellular component | cytoplasmic microtubule |
GO_0000407 | Cellular component | phagophore assembly site |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0010698 | Molecular function | acetyltransferase activator activity |
GO_0016922 | Molecular function | nuclear receptor binding |
GO_0048487 | Molecular function | beta-tubulin binding |
GO_0042393 | Molecular function | histone binding |
GO_0003682 | Molecular function | chromatin binding |
GO_0035091 | Molecular function | phosphatidylinositol binding |
GO_0035035 | Molecular function | histone acetyltransferase binding |
GO_0005515 | Molecular function | protein binding |
Gene name | BCAS3 |
Protein name | Breast carcinoma amplified sequence 3 BCAS3 microtubule associated cell migration factor BCAS3 protein BCAS3 microtubule associated cell migration factor (Breast carcinoma-amplified sequence 3) (GAOB1) |
Synonyms | |
Description | FUNCTION: Plays a role in angiogenesis. Participates in the regulation of cell polarity and directional endothelial cell migration by mediating both the activation and recruitment of CDC42 and the reorganization of the actin cytoskeleton at the cell leading edge. Promotes filipodia formation (By similarity). Functions synergistically with PELP1 as a transcriptional coactivator of estrogen receptor-responsive genes. Stimulates histone acetyltransferase activity. Binds to chromatin. Plays a regulatory role in autophagic activity. In complex with PHAF1, associates with the preautophagosomal structure during both non-selective and selective autophagy . Probably binds phosphatidylinositol 3-phosphate (PtdIns3P) which would mediate the recruitment preautophagosomal structures . . |
Accessions | K7EKB0 ENST00000588874.5 [Q9H6U6-6] ENST00000407086.8 [Q9H6U6-2] ENST00000590128.5 ENST00000390652.9 [Q9H6U6-1] ENST00000586705.5 K7EJH7 ENST00000588462.5 [Q9H6U6-8] ENST00000589222.5 [Q9H6U6-7] ENST00000626960.2 ENST00000588532.5 K7EIE2 ENST00000585744.5 ENST00000592848.5 ENST00000586484.1 B7ZKU7 Q05D99 ENST00000408905.7 [Q9H6U6-3] ENST00000588168.5 K7ELH0 K7ESE9 ENST00000586241.1 K7EJU7 Q9H6U6 K7EIR7 K7EQA6 ENST00000591147.5 K7EML5 ENST00000587002.1 |