BCAM report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
endothelial cell	30 studies	50% ± 22%	Explore
pericyte	23 studies	46% ± 22%	Explore
smooth muscle cell	21 studies	38% ± 16%	Explore
basal cell	18 studies	46% ± 22%	Explore
capillary endothelial cell	15 studies	45% ± 18%	Explore
vein endothelial cell	13 studies	49% ± 18%	Explore
endothelial cell of vascular tree	13 studies	44% ± 19%	Explore
endothelial cell of artery	11 studies	56% ± 17%	Explore
type I pneumocyte	10 studies	56% ± 19%	Explore
endothelial cell of lymphatic vessel	9 studies	30% ± 16%	Explore
type II pneumocyte	8 studies	33% ± 20%	Explore
epithelial cell	8 studies	54% ± 24%	Explore
mesothelial cell	7 studies	71% ± 25%	Explore
secretory cell	7 studies	46% ± 22%	Explore
renal alpha-intercalated cell	6 studies	41% ± 11%	Explore
kidney loop of Henle epithelial cell	5 studies	50% ± 26%	Explore
podocyte	5 studies	81% ± 29%	Explore
abnormal cell	5 studies	30% ± 11%	Explore
ciliated cell	5 studies	41% ± 11%	Explore
club cell	5 studies	40% ± 25%	Explore
kidney distal convoluted tubule epithelial cell	4 studies	64% ± 9%	Explore
neuroendocrine cell	4 studies	56% ± 14%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	53% ± 18%	Explore
pancreatic A cell	3 studies	39% ± 4%	Explore
glomerular endothelial cell	3 studies	32% ± 6%	Explore
kidney connecting tubule epithelial cell	3 studies	75% ± 8%	Explore
myofibroblast cell	3 studies	37% ± 18%	Explore
parietal epithelial cell	3 studies	64% ± 28%	Explore
epithelial cell of proximal tubule	3 studies	33% ± 25%	Explore
enteroendocrine cell	3 studies	53% ± 21%	Explore
progenitor cell	3 studies	56% ± 17%	Explore
renal principal cell	3 studies	74% ± 14%	Explore
myoepithelial cell	3 studies	61% ± 10%	Explore
luminal cell of prostate epithelium	3 studies	21% ± 2%	Explore
muscle cell	3 studies	29% ± 10%	Explore
brush cell	3 studies	35% ± 7%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
lung	9 studies	25% ± 6%	Explore
kidney	5 studies	28% ± 9%	Explore
breast	3 studies	26% ± 7%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
prostate	100%	19465.67	244 / 245	99%	771.00	498 / 502
thymus	100%	30946.89	653 / 653	90%	259.30	545 / 605
ovary	91%	6447.59	163 / 180	99%	1471.42	425 / 430
kidney	100%	36300.90	89 / 89	86%	158.84	779 / 901
breast	100%	17647.63	459 / 459	85%	266.50	951 / 1118
lung	99%	13297.27	574 / 578	71%	164.94	815 / 1155
uterus	100%	13166.86	170 / 170	60%	162.98	275 / 459
bladder	95%	7133.52	20 / 21	53%	130.00	268 / 504
pancreas	94%	4296.63	308 / 328	49%	83.74	88 / 178
esophagus	94%	5488.35	1352 / 1445	43%	77.49	78 / 183
liver	66%	2778.67	149 / 226	58%	105.91	237 / 406
stomach	94%	4310.18	336 / 359	21%	29.88	59 / 286
adrenal gland	74%	2621.49	190 / 258	31%	37.35	72 / 230
blood vessel	100%	27187.02	1335 / 1335	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	67.04	1 / 1
adipose	100%	13046.12	1201 / 1204	0%	0	0 / 0
heart	100%	8236.89	857 / 861	0%	0	0 / 0
spleen	98%	4770.60	237 / 241	0%	0	0 / 0
intestine	85%	4109.79	822 / 966	8%	13.38	43 / 527
skin	72%	4972.39	1304 / 1809	7%	7.71	31 / 472
muscle	57%	1983.47	458 / 803	0%	0	0 / 0
tonsil	0%	0	0 / 0	42%	79.36	19 / 45
eye	0%	0	0 / 0	41%	35.67	33 / 80
brain	22%	629.45	575 / 2642	8%	6.46	53 / 705
peripheral blood	1%	20.52	7 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0