Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 19 studies | 26% ± 9% | |
fibroblast | 16 studies | 26% ± 9% | |
plasma cell | 14 studies | 30% ± 11% | |
oligodendrocyte | 12 studies | 27% ± 11% | |
astrocyte | 11 studies | 28% ± 14% | |
macrophage | 10 studies | 27% ± 8% | |
adipocyte | 9 studies | 35% ± 9% | |
ciliated cell | 9 studies | 24% ± 7% | |
GABAergic neuron | 8 studies | 33% ± 19% | |
microglial cell | 8 studies | 25% ± 8% | |
pericyte | 8 studies | 21% ± 5% | |
type I pneumocyte | 8 studies | 24% ± 5% | |
smooth muscle cell | 7 studies | 21% ± 4% | |
epithelial cell | 7 studies | 40% ± 19% | |
basal cell | 7 studies | 31% ± 13% | |
oligodendrocyte precursor cell | 7 studies | 29% ± 12% | |
glutamatergic neuron | 6 studies | 47% ± 23% | |
club cell | 6 studies | 25% ± 10% | |
endothelial cell of lymphatic vessel | 6 studies | 23% ± 4% | |
type II pneumocyte | 6 studies | 31% ± 7% | |
plasmacytoid dendritic cell | 6 studies | 25% ± 9% | |
plasmablast | 5 studies | 36% ± 22% | |
myeloid cell | 5 studies | 26% ± 5% | |
cardiac muscle cell | 5 studies | 37% ± 8% | |
dendritic cell | 5 studies | 24% ± 7% | |
respiratory goblet cell | 5 studies | 30% ± 10% | |
monocyte | 5 studies | 24% ± 7% | |
goblet cell | 5 studies | 39% ± 21% | |
neuron | 4 studies | 28% ± 10% | |
myofibroblast cell | 4 studies | 21% ± 5% | |
retina horizontal cell | 4 studies | 21% ± 6% | |
retinal cone cell | 4 studies | 22% ± 4% | |
retinal rod cell | 4 studies | 21% ± 4% | |
mucus secreting cell | 4 studies | 28% ± 7% | |
lymphocyte | 4 studies | 23% ± 6% | |
hepatocyte | 4 studies | 49% ± 20% | |
connective tissue cell | 4 studies | 25% ± 9% | |
alveolar macrophage | 4 studies | 26% ± 9% | |
interneuron | 4 studies | 43% ± 20% | |
ionocyte | 3 studies | 25% ± 6% | |
classical monocyte | 3 studies | 20% ± 4% | |
conventional dendritic cell | 3 studies | 26% ± 8% | |
hematopoietic precursor cell | 3 studies | 23% ± 2% | |
retinal ganglion cell | 3 studies | 38% ± 7% | |
squamous epithelial cell | 3 studies | 29% ± 18% | |
amacrine cell | 3 studies | 20% ± 2% | |
mesothelial cell | 3 studies | 26% ± 4% | |
mononuclear phagocyte | 3 studies | 21% ± 4% | |
Mueller cell | 3 studies | 18% ± 4% | |
muscle cell | 3 studies | 46% ± 22% | |
megakaryocyte-erythroid progenitor cell | 3 studies | 25% ± 10% | |
enteroendocrine cell | 3 studies | 24% ± 7% | |
T cell | 3 studies | 19% ± 1% | |
natural killer cell | 3 studies | 18% ± 2% | |
mast cell | 3 studies | 26% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 5524.67 | 1445 / 1445 | 100% | 79.51 | 183 / 183 |
breast | 100% | 5040.88 | 459 / 459 | 100% | 92.94 | 1115 / 1118 |
lung | 100% | 5106.34 | 576 / 578 | 100% | 76.21 | 1155 / 1155 |
stomach | 100% | 4434.88 | 359 / 359 | 100% | 65.13 | 285 / 286 |
prostate | 100% | 4958.29 | 245 / 245 | 100% | 86.24 | 500 / 502 |
ovary | 100% | 6401.46 | 180 / 180 | 100% | 51.05 | 428 / 430 |
bladder | 100% | 5516.95 | 21 / 21 | 99% | 63.35 | 501 / 504 |
thymus | 100% | 5860.52 | 653 / 653 | 99% | 80.39 | 599 / 605 |
pancreas | 100% | 6401.47 | 328 / 328 | 99% | 61.75 | 176 / 178 |
intestine | 100% | 5148.49 | 966 / 966 | 99% | 64.95 | 521 / 527 |
kidney | 100% | 3895.79 | 89 / 89 | 98% | 72.89 | 886 / 901 |
uterus | 100% | 5093.44 | 170 / 170 | 98% | 58.18 | 450 / 459 |
adrenal gland | 100% | 5968.14 | 258 / 258 | 97% | 54.00 | 222 / 230 |
brain | 97% | 2919.60 | 2557 / 2642 | 99% | 47.02 | 701 / 705 |
liver | 100% | 4822.49 | 226 / 226 | 95% | 44.58 | 387 / 406 |
skin | 100% | 6679.84 | 1806 / 1809 | 93% | 66.93 | 440 / 472 |
blood vessel | 100% | 7707.08 | 1335 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 25482.02 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 3968.33 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 19.60 | 1 / 1 |
adipose | 100% | 5472.21 | 1203 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 97% | 51.75 | 28 / 29 |
heart | 96% | 6001.22 | 823 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 96% | 59.05 | 43 / 45 |
eye | 0% | 0 | 0 / 0 | 73% | 35.27 | 58 / 80 |
peripheral blood | 56% | 2798.78 | 519 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0048280 | Biological process | vesicle fusion with Golgi apparatus |
GO_0061025 | Biological process | membrane fusion |
GO_0006886 | Biological process | intracellular protein transport |
GO_0032252 | Biological process | secretory granule localization |
GO_0007264 | Biological process | small GTPase-mediated signal transduction |
GO_0045056 | Biological process | transcytosis |
GO_0048211 | Biological process | Golgi vesicle docking |
GO_0006888 | Biological process | endoplasmic reticulum to Golgi vesicle-mediated transport |
GO_1900076 | Biological process | regulation of cellular response to insulin stimulus |
GO_0005795 | Cellular component | Golgi stack |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0016020 | Cellular component | membrane |
GO_0005815 | Cellular component | microtubule organizing center |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0001650 | Cellular component | fibrillar center |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005829 | Cellular component | cytosol |
GO_0030133 | Cellular component | transport vesicle |
GO_0012507 | Cellular component | ER to Golgi transport vesicle membrane |
GO_0045296 | Molecular function | cadherin binding |
GO_0003723 | Molecular function | RNA binding |
GO_0005515 | Molecular function | protein binding |
Gene name | USO1 |
Protein name | General vesicular transport factor p115 (Protein USO1 homolog) (Transcytosis-associated protein) (TAP) (Vesicle-docking protein) Alternative protein USO1 |
Synonyms | VDP |
Description | FUNCTION: General vesicular transport factor required for intercisternal transport in the Golgi stack; it is required for transcytotic fusion and/or subsequent binding of the vesicles to the target membrane. May well act as a vesicular anchor by interacting with the target membrane and holding the vesicular and target membranes in proximity. . |
Accessions | L8E922 ENST00000514213.7 [O60763-1] O60763 ENST00000264904.8 [O60763-2] |