Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 20 studies | 35% ± 14% | |
astrocyte | 16 studies | 42% ± 20% | |
microglial cell | 13 studies | 50% ± 13% | |
oligodendrocyte precursor cell | 12 studies | 37% ± 16% | |
oligodendrocyte | 12 studies | 44% ± 16% | |
GABAergic neuron | 11 studies | 45% ± 25% | |
glutamatergic neuron | 11 studies | 48% ± 25% | |
macrophage | 11 studies | 43% ± 17% | |
fibroblast | 10 studies | 27% ± 11% | |
adipocyte | 9 studies | 28% ± 7% | |
mast cell | 8 studies | 29% ± 11% | |
epithelial cell | 7 studies | 36% ± 24% | |
ciliated cell | 7 studies | 35% ± 19% | |
endothelial cell of lymphatic vessel | 7 studies | 39% ± 12% | |
interneuron | 6 studies | 55% ± 24% | |
pericyte | 6 studies | 33% ± 16% | |
B cell | 6 studies | 32% ± 10% | |
dendritic cell | 6 studies | 36% ± 15% | |
T cell | 6 studies | 31% ± 7% | |
smooth muscle cell | 6 studies | 24% ± 5% | |
neuron | 5 studies | 58% ± 23% | |
cardiac muscle cell | 5 studies | 39% ± 9% | |
myeloid cell | 5 studies | 41% ± 9% | |
monocyte | 5 studies | 42% ± 9% | |
type I pneumocyte | 5 studies | 44% ± 10% | |
type II pneumocyte | 5 studies | 41% ± 8% | |
granule cell | 4 studies | 41% ± 7% | |
CD4-positive, alpha-beta T cell | 4 studies | 29% ± 8% | |
mesothelial cell | 4 studies | 33% ± 8% | |
Mueller cell | 4 studies | 38% ± 11% | |
amacrine cell | 4 studies | 27% ± 11% | |
retina horizontal cell | 4 studies | 45% ± 16% | |
retinal cone cell | 4 studies | 42% ± 14% | |
retinal rod cell | 4 studies | 42% ± 9% | |
club cell | 4 studies | 41% ± 10% | |
natural killer cell | 4 studies | 32% ± 7% | |
leukocyte | 4 studies | 50% ± 8% | |
GABAergic interneuron | 3 studies | 42% ± 8% | |
progenitor cell | 3 studies | 30% ± 10% | |
CD8-positive, alpha-beta T cell | 3 studies | 29% ± 6% | |
plasma cell | 3 studies | 42% ± 8% | |
GABAergic amacrine cell | 3 studies | 25% ± 7% | |
glycinergic amacrine cell | 3 studies | 24% ± 3% | |
retinal ganglion cell | 3 studies | 33% ± 14% | |
endothelial cell of vascular tree | 3 studies | 38% ± 20% | |
hepatocyte | 3 studies | 49% ± 16% | |
retinal pigment epithelial cell | 3 studies | 45% ± 23% | |
ependymal cell | 3 studies | 45% ± 18% | |
alveolar macrophage | 3 studies | 47% ± 9% | |
capillary endothelial cell | 3 studies | 22% ± 4% | |
respiratory goblet cell | 3 studies | 52% ± 18% | |
lymphocyte | 3 studies | 53% ± 11% | |
basal cell | 3 studies | 50% ± 20% | |
mural cell | 3 studies | 36% ± 19% | |
mucus secreting cell | 3 studies | 46% ± 6% | |
regulatory T cell | 3 studies | 32% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2127.02 | 1445 / 1445 | 100% | 20.26 | 183 / 183 |
prostate | 100% | 2120.98 | 245 / 245 | 100% | 18.45 | 502 / 502 |
brain | 100% | 2269.27 | 2641 / 2642 | 100% | 24.19 | 705 / 705 |
intestine | 100% | 1999.91 | 966 / 966 | 100% | 19.80 | 526 / 527 |
ovary | 100% | 1819.82 | 180 / 180 | 100% | 23.45 | 429 / 430 |
pancreas | 100% | 1170.93 | 327 / 328 | 100% | 16.45 | 178 / 178 |
thymus | 100% | 2522.41 | 653 / 653 | 100% | 20.28 | 603 / 605 |
stomach | 100% | 1790.56 | 359 / 359 | 100% | 20.30 | 285 / 286 |
breast | 100% | 1728.42 | 459 / 459 | 100% | 24.74 | 1114 / 1118 |
skin | 100% | 1675.75 | 1807 / 1809 | 100% | 23.29 | 470 / 472 |
kidney | 100% | 2128.18 | 89 / 89 | 99% | 15.33 | 895 / 901 |
bladder | 100% | 1998.24 | 21 / 21 | 99% | 15.86 | 499 / 504 |
lung | 100% | 1766.32 | 577 / 578 | 99% | 16.34 | 1144 / 1155 |
uterus | 100% | 2179.32 | 170 / 170 | 98% | 14.74 | 451 / 459 |
adrenal gland | 100% | 2313.36 | 258 / 258 | 97% | 21.09 | 222 / 230 |
liver | 99% | 1014.36 | 223 / 226 | 98% | 12.55 | 397 / 406 |
adipose | 100% | 1557.78 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 54.54 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 19.85 | 29 / 29 |
muscle | 100% | 3259.72 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1928.46 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 16.19 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 17.87 | 1 / 1 |
blood vessel | 100% | 2018.66 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 1794.05 | 847 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 98% | 1402.45 | 909 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0030182 | Biological process | neuron differentiation |
GO_0021987 | Biological process | cerebral cortex development |
GO_0006888 | Biological process | endoplasmic reticulum to Golgi vesicle-mediated transport |
GO_0006901 | Biological process | vesicle coating |
GO_0099022 | Biological process | vesicle tethering |
GO_0005802 | Cellular component | trans-Golgi network |
GO_1990071 | Cellular component | TRAPPII protein complex |
GO_0030008 | Cellular component | TRAPP complex |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0005515 | Molecular function | protein binding |
Gene name | TRAPPC9 |
Protein name | Trafficking protein particle complex subunit 9 (NIK- and IKBKB-binding protein) (Tularik gene 1 protein) Trafficking protein particle complex subunit 9 |
Synonyms | KIAA1882 NIBP T1 |
Description | FUNCTION: Functions as an activator of NF-kappa-B through increased phosphorylation of the IKK complex. May function in neuronal cells differentiation. May play a role in vesicular transport from endoplasmic reticulum to Golgi. . |
Accessions | A0A0J9YWK7 ENST00000438773.4 [Q96Q05-1] Q96Q05 H0YBR0 ENST00000520857.5 ENST00000634178.1 ENST00000648948.2 [Q96Q05-1] |