TFG report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
fibroblast	33 studies	27% ± 11%	Explore
endothelial cell	29 studies	26% ± 9%	Explore
pericyte	17 studies	26% ± 8%	Explore
smooth muscle cell	16 studies	24% ± 6%	Explore
connective tissue cell	15 studies	28% ± 11%	Explore
endothelial cell of lymphatic vessel	14 studies	23% ± 8%	Explore
epithelial cell	14 studies	38% ± 19%	Explore
mast cell	11 studies	22% ± 7%	Explore
myofibroblast cell	11 studies	27% ± 9%	Explore
basal cell	11 studies	34% ± 15%	Explore
ciliated cell	10 studies	31% ± 11%	Explore
mesothelial cell	9 studies	34% ± 15%	Explore
endothelial cell of vascular tree	9 studies	22% ± 6%	Explore
macrophage	9 studies	23% ± 7%	Explore
goblet cell	8 studies	31% ± 18%	Explore
type I pneumocyte	7 studies	25% ± 8%	Explore
astrocyte	7 studies	30% ± 10%	Explore
plasma cell	6 studies	26% ± 11%	Explore
enterocyte	6 studies	27% ± 5%	Explore
abnormal cell	6 studies	35% ± 16%	Explore
capillary endothelial cell	6 studies	19% ± 4%	Explore
vein endothelial cell	6 studies	23% ± 8%	Explore
secretory cell	6 studies	23% ± 9%	Explore
oligodendrocyte precursor cell	6 studies	31% ± 9%	Explore
progenitor cell	5 studies	25% ± 5%	Explore
retinal rod cell	5 studies	20% ± 4%	Explore
adipocyte	5 studies	22% ± 7%	Explore
endothelial cell of artery	5 studies	20% ± 4%	Explore
Mueller cell	5 studies	21% ± 3%	Explore
neuron	5 studies	29% ± 15%	Explore
oligodendrocyte	5 studies	25% ± 6%	Explore
hematopoietic precursor cell	4 studies	25% ± 13%	Explore
respiratory goblet cell	4 studies	26% ± 17%	Explore
microglial cell	4 studies	23% ± 5%	Explore
club cell	4 studies	28% ± 6%	Explore
type II pneumocyte	4 studies	24% ± 10%	Explore
retina horizontal cell	4 studies	27% ± 10%	Explore
hepatocyte	4 studies	47% ± 19%	Explore
GABAergic neuron	4 studies	44% ± 17%	Explore
glutamatergic neuron	4 studies	53% ± 20%	Explore
interneuron	4 studies	36% ± 20%	Explore
squamous epithelial cell	3 studies	35% ± 22%	Explore
pancreatic A cell	3 studies	44% ± 11%	Explore
type B pancreatic cell	3 studies	53% ± 14%	Explore
classical monocyte	3 studies	26% ± 6%	Explore
B cell	3 studies	21% ± 3%	Explore
CD4-positive, alpha-beta T cell	3 studies	20% ± 2%	Explore
conventional dendritic cell	3 studies	27% ± 8%	Explore
non-classical monocyte	3 studies	25% ± 8%	Explore
kidney loop of Henle epithelial cell	3 studies	20% ± 2%	Explore
neural crest cell	3 studies	25% ± 5%	Explore
extravillous trophoblast	3 studies	27% ± 2%	Explore
placental villous trophoblast	3 studies	54% ± 11%	Explore
myeloid cell	3 studies	24% ± 9%	Explore
retinal cone cell	3 studies	26% ± 9%	Explore
lymphocyte	3 studies	27% ± 2%	Explore
rod bipolar cell	3 studies	20% ± 2%	Explore
luminal hormone-sensing cell of mammary gland	3 studies	25% ± 2%	Explore
pancreatic ductal cell	3 studies	55% ± 21%	Explore
megakaryocyte-erythroid progenitor cell	3 studies	31% ± 14%	Explore
enteroendocrine cell	3 studies	29% ± 13%	Explore
adventitial cell	3 studies	25% ± 8%	Explore
transit amplifying cell	3 studies	33% ± 22%	Explore
plasmacytoid dendritic cell	3 studies	23% ± 6%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
lung	10 studies	25% ± 8%	Explore
intestine	7 studies	26% ± 12%	Explore
brain	7 studies	35% ± 16%	Explore
eye	6 studies	25% ± 9%	Explore
placenta	4 studies	32% ± 8%	Explore
liver	4 studies	29% ± 12%	Explore
pancreas	3 studies	49% ± 13%	Explore
peripheral blood	3 studies	22% ± 3%	Explore
breast	3 studies	20% ± 3%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	5436.81	1445 / 1445	100%	49.31	183 / 183
intestine	100%	5587.77	966 / 966	100%	34.96	527 / 527
lung	100%	5618.35	578 / 578	100%	41.49	1155 / 1155
ovary	100%	4810.58	180 / 180	100%	48.32	430 / 430
stomach	100%	4132.93	359 / 359	100%	39.18	286 / 286
uterus	100%	5204.31	170 / 170	100%	41.90	459 / 459
breast	100%	5449.65	459 / 459	100%	39.01	1117 / 1118
bladder	100%	4898.38	21 / 21	100%	36.21	503 / 504
prostate	100%	4859.25	245 / 245	100%	29.15	501 / 502
skin	100%	6730.54	1809 / 1809	100%	31.89	471 / 472
liver	100%	5662.31	226 / 226	100%	29.44	405 / 406
brain	100%	3637.49	2630 / 2642	100%	26.10	705 / 705
kidney	100%	5037.61	89 / 89	99%	25.66	896 / 901
pancreas	100%	3635.29	328 / 328	99%	29.26	177 / 178
thymus	100%	6509.41	653 / 653	99%	27.68	600 / 605
adrenal gland	100%	6288.86	258 / 258	98%	19.49	226 / 230
adipose	100%	5698.56	1204 / 1204	0%	0	0 / 0
blood vessel	100%	5516.55	1335 / 1335	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	16.56	29 / 29
muscle	100%	3744.80	803 / 803	0%	0	0 / 0
spleen	100%	4116.78	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	46.39	45 / 45
ureter	0%	0	0 / 0	100%	14.30	1 / 1
heart	98%	4928.14	848 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	94%	12.74	75 / 80
peripheral blood	87%	2842.82	804 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0