Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
thymus | 100% | 1807.40 | 652 / 653 | 95% | 25.40 | 577 / 605 |
prostate | 96% | 1290.73 | 234 / 245 | 95% | 21.95 | 477 / 502 |
pancreas | 100% | 5967.44 | 328 / 328 | 89% | 21.02 | 158 / 178 |
lung | 99% | 1845.30 | 572 / 578 | 90% | 27.56 | 1035 / 1155 |
stomach | 97% | 3209.73 | 348 / 359 | 81% | 16.06 | 233 / 286 |
intestine | 80% | 2023.16 | 777 / 966 | 82% | 14.98 | 431 / 527 |
ovary | 97% | 943.82 | 174 / 180 | 64% | 8.68 | 277 / 430 |
breast | 60% | 562.51 | 277 / 459 | 92% | 30.87 | 1030 / 1118 |
kidney | 84% | 754.04 | 75 / 89 | 65% | 8.66 | 585 / 901 |
bladder | 71% | 542.76 | 15 / 21 | 65% | 10.06 | 327 / 504 |
uterus | 65% | 476.76 | 111 / 170 | 62% | 10.00 | 286 / 459 |
liver | 87% | 835.00 | 196 / 226 | 36% | 4.14 | 145 / 406 |
spleen | 100% | 6110.08 | 241 / 241 | 0% | 0 | 0 / 0 |
esophagus | 41% | 292.80 | 590 / 1445 | 57% | 11.49 | 104 / 183 |
peripheral blood | 96% | 4581.05 | 893 / 929 | 0% | 0 | 0 / 0 |
muscle | 90% | 1892.48 | 726 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 90% | 893.99 | 1200 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 83% | 41.46 | 24 / 29 |
heart | 82% | 1046.57 | 709 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 82% | 25.07 | 37 / 45 |
skin | 22% | 114.58 | 393 / 1809 | 58% | 12.17 | 276 / 472 |
adipose | 53% | 439.99 | 640 / 1204 | 0% | 0 | 0 / 0 |
adrenal gland | 33% | 170.37 | 84 / 258 | 16% | 1.65 | 36 / 230 |
brain | 1% | 9.09 | 28 / 2642 | 9% | 0.95 | 66 / 705 |
eye | 0% | 0 | 0 / 0 | 3% | 0.61 | 2 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0045596 | Biological process | negative regulation of cell differentiation |
GO_0048255 | Biological process | mRNA stabilization |
GO_0001701 | Biological process | in utero embryonic development |
GO_0005813 | Cellular component | centrosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_1990817 | Molecular function | poly(A) RNA polymerase activity |
GO_0005515 | Molecular function | protein binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | TENT5C |
Protein name | Terminal nucleotidyltransferase 5C (EC 2.7.7.19) (Non-canonical poly(A) polymerase FAM46C) |
Synonyms | FAM46C |
Description | FUNCTION: Catalyzes the transfer of one adenosine molecule from an ATP to an mRNA poly(A) tail bearing a 3'-OH terminal group and enhances mRNA stability and gene expression . Can also elongate RNA oligos ending with uridine molecule, provided that the sequence is adenosine-rich . Mainly targets mRNAs encoding endoplasmic reticulum-targeted protein . .; FUNCTION: (Microbial infection) Seems to enhance replication of some viruses, including yellow fever virus, in response to type I interferon. . |
Accessions | Q5VWP2 ENST00000369448.4 |