Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2034.64 | 1445 / 1445 | 100% | 3.10 | 183 / 183 |
ovary | 100% | 1565.54 | 180 / 180 | 100% | 5.24 | 430 / 430 |
brain | 100% | 1996.93 | 2637 / 2642 | 98% | 2.84 | 689 / 705 |
stomach | 100% | 2241.91 | 359 / 359 | 91% | 2.64 | 261 / 286 |
intestine | 100% | 2112.61 | 966 / 966 | 84% | 2.22 | 441 / 527 |
prostate | 100% | 2627.21 | 245 / 245 | 84% | 1.58 | 420 / 502 |
pancreas | 100% | 2437.75 | 328 / 328 | 78% | 1.38 | 138 / 178 |
thymus | 100% | 2487.10 | 653 / 653 | 76% | 1.46 | 457 / 605 |
breast | 100% | 2199.75 | 459 / 459 | 62% | 1.11 | 691 / 1118 |
adrenal gland | 100% | 3800.66 | 258 / 258 | 61% | 1.03 | 141 / 230 |
bladder | 100% | 2259.24 | 21 / 21 | 60% | 1.25 | 303 / 504 |
lung | 100% | 2508.85 | 578 / 578 | 58% | 1.23 | 669 / 1155 |
kidney | 100% | 2602.02 | 89 / 89 | 56% | 1.15 | 504 / 901 |
uterus | 100% | 2110.20 | 170 / 170 | 56% | 0.94 | 256 / 459 |
skin | 100% | 2140.02 | 1809 / 1809 | 53% | 0.90 | 249 / 472 |
liver | 100% | 2273.07 | 226 / 226 | 15% | 0.24 | 61 / 406 |
adipose | 100% | 2176.90 | 1204 / 1204 | 0% | 0 | 0 / 0 |
peripheral blood | 100% | 3716.96 | 929 / 929 | 0% | 0 | 0 / 0 |
spleen | 100% | 3660.23 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 1.00 | 1 / 1 |
heart | 100% | 2045.09 | 859 / 861 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 1569.47 | 1327 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 1902.92 | 798 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 90% | 1.64 | 26 / 29 |
eye | 0% | 0 | 0 / 0 | 49% | 0.78 | 39 / 80 |
tonsil | 0% | 0 | 0 / 0 | 38% | 0.58 | 17 / 45 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006366 | Biological process | transcription by RNA polymerase II |
GO_0001892 | Biological process | embryonic placenta development |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0051123 | Biological process | RNA polymerase II preinitiation complex assembly |
GO_0006282 | Biological process | regulation of DNA repair |
GO_0060173 | Biological process | limb development |
GO_0035264 | Biological process | multicellular organism growth |
GO_0006338 | Biological process | chromatin remodeling |
GO_0060261 | Biological process | positive regulation of transcription initiation by RNA polymerase II |
GO_0045893 | Biological process | positive regulation of DNA-templated transcription |
GO_0036285 | Biological process | SAGA complex assembly |
GO_0001756 | Biological process | somitogenesis |
GO_0006355 | Biological process | regulation of DNA-templated transcription |
GO_0042789 | Biological process | mRNA transcription by RNA polymerase II |
GO_0006915 | Biological process | apoptotic process |
GO_0043484 | Biological process | regulation of RNA splicing |
GO_0006367 | Biological process | transcription initiation at RNA polymerase II promoter |
GO_0048371 | Biological process | lateral mesodermal cell differentiation |
GO_0070365 | Biological process | hepatocyte differentiation |
GO_1905069 | Biological process | allantois development |
GO_0006352 | Biological process | DNA-templated transcription initiation |
GO_0000082 | Biological process | G1/S transition of mitotic cell cycle |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0005669 | Cellular component | transcription factor TFIID complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0097550 | Cellular component | transcription preinitiation complex |
GO_0033276 | Cellular component | transcription factor TFTC complex |
GO_0005737 | Cellular component | cytoplasm |
GO_0000124 | Cellular component | SAGA complex |
GO_0001673 | Cellular component | male germ cell nucleus |
GO_0005634 | Cellular component | nucleus |
GO_0070063 | Molecular function | RNA polymerase binding |
GO_0003677 | Molecular function | DNA binding |
GO_0019899 | Molecular function | enzyme binding |
GO_1990841 | Molecular function | promoter-specific chromatin binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0030331 | Molecular function | nuclear estrogen receptor binding |
GO_0004402 | Molecular function | histone acetyltransferase activity |
GO_0016251 | Molecular function | RNA polymerase II general transcription initiation factor activity |
GO_0005515 | Molecular function | protein binding |
Gene name | TAF10 |
Protein name | Transcription initiation factor TFIID subunit 10 (STAF28) (Transcription initiation factor TFIID 30 kDa subunit) (TAF(II)30) (TAFII-30) (TAFII30) TATA-box binding protein associated factor 10 |
Synonyms | TAF2H TAF2A TAFII30 |
Description | FUNCTION: The TFIID basal transcription factor complex plays a major role in the initiation of RNA polymerase II (Pol II)-dependent transcription . TFIID recognizes and binds promoters with or without a TATA box via its subunit TBP, a TATA-box-binding protein, and promotes assembly of the pre-initiation complex (PIC) . The TFIID complex consists of TBP and TBP-associated factors (TAFs), including TAF1, TAF2, TAF3, TAF4, TAF5, TAF6, TAF7, TAF8, TAF9, TAF10, TAF11, TAF12 and TAF13 . TAF10 is also component of the PCAF histone acetylase complex, the TATA-binding protein-free TAF complex (TFTC) and the STAGA transcription coactivator-HAT complex . May regulate cyclin E expression (By similarity). . |
Accessions | ENST00000299424.9 ENST00000693612.1 ENST00000527248.3 A0A087WWP5 A0A8I5KQU8 Q12962 |